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Name : Rpic12D_5327 (Rpic12D_5327) Accession : YP_002973795.1 Strain : Genome accession: NC_012849 Putative virulence/resistance : Unknown Product : Integrase catalytic region Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 215473 - 216342 bp Length : 870 bp Strand : - Note : PFAM: Integrase catalytic region; KEGG: mca:MCA0907 ISMca2, transposase, OrfB DNA sequence : ATGAGAAAGCTGTATCCGGTGAGTGTGTCCTGCGGTGTGCTGGAGGTGAGCGCGAGCGGGTACTTCAACTGGCTGCGCCG AGGCGAGTCTGGCCACGGTGGCCCTGGCCGGCGCTACAGCGACGAAGCCTTGCTGGCGCACATTCGTGCCATCCACGCCC AGGTCAAGGGCGAATACGGCTGGCCACGCATGCACAAGGAACTGCTGGCCCGAGGCATCCGTGTGGGCAAAGACCGGGTT CGCAAGCTCATGCAGCAGCACGCCATCAAGGCCAGGACGAAACGCAAGTTTGTGGTCACCACCGACAGCAGACACAGCCT GCCGGTGGCGCCCGACCTGGTGCAGCGGCGCTTCAAGCCCGAGGAGCCCAACCAGCTCTGGAGTGGCGACATCACCTACA TCCAGACCGACGAGGGCTGGCTGTACCTGGCTGCGGTCATCGACCTGTTCAGCCGTCAGGTGGTGGGCTGGAGCCTGCAG CCGCACATGCAGGCGGGCTTGGTCAAGGACGCGCTGGCCATGGCGTGGTGGCGCCGTAGACCGCCTCCTGGGGTGATATT CCACAGCGACCGGGGCAGCCAGTATTGCAGCGCAGAGTTCCAGCAGGCCCTGAAGAACTGGGGCATCCAATCATCGATGA GCCGCAAGGGGAACTGTTGGGACAACGCACCGACGGAAAGCTTCTGGGGGCGGCTGAAAACCGCCAGCGTGCATGGGTGC AAATTCGCCACCCGTGAGCAGGCAAGTCAGGCGGTGATGGACTGGATGGCCTTCTACAATCACCGAAGGTTGCATTCGTC ACTGGGCTACCTCAGCCCGATGCAATACGAGCAGCGCTGGTACGAGGCACAGCGTAAAAAGGCCGCGTGA Protein sequence : MRKLYPVSVSCGVLEVSASGYFNWLRRGESGHGGPGRRYSDEALLAHIRAIHAQVKGEYGWPRMHKELLARGIRVGKDRV RKLMQQHAIKARTKRKFVVTTDSRHSLPVAPDLVQRRFKPEEPNQLWSGDITYIQTDEGWLYLAAVIDLFSRQVVGWSLQ PHMQAGLVKDALAMAWWRRRPPPGVIFHSDRGSQYCSAEFQQALKNWGIQSSMSRKGNCWDNAPTESFWGRLKTASVHGC KFATREQASQAVMDWMAFYNHRRLHSSLGYLSPMQYEQRWYEAQRKKAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnpA1133 | ACK44540.1 | TnpA | Not tested | SGI1 | Protein | 1e-43 | 45 |
| orfB | AGK07032.1 | IS1133 transposase; OrfB | Not tested | SGI1 | Protein | 1e-43 | 45 |
| orfB | AGK07090.1 | IS1133 transposase; OrfB | Not tested | SGI1 | Protein | 1e-43 | 45 |
| Z1134 | NP_286669.1 | hypothetical protein | Not tested | TAI | Protein | 8e-58 | 44 |
| Z1573 | NP_287077.1 | hypothetical protein | Not tested | TAI | Protein | 8e-58 | 44 |
| c3575 | NP_755450.1 | transposase insF | Not tested | PAI I CFT073 | Protein | 6e-58 | 44 |
| hp1 | AAC61713.1 | Hp1 | Not tested | PAI I CFT073 | Protein | 5e-58 | 44 |
| unnamed | AAF09022.1 | unknown | Not tested | SHI-O | Protein | 3e-58 | 43 |
| unnamed | AAQ07468.1 | TnpI-like protein | Not tested | Not named | Protein | 9e-57 | 43 |
| unnamed | AAB86997.1 | hypothetical 31 KD protein | Not tested | SHI-1 | Protein | 6e-58 | 43 |
| unnamed | AAF09030.1 | unknown | Not tested | SHI-O | Protein | 6e-58 | 43 |
| tnpI | AAD44751.1 | TnpI | Not tested | SHI-2 | Protein | 6e-58 | 43 |
| insF | CAC43414.1 | transposase of insertion element IS3 | Not tested | PAI III 536 | Protein | 1e-45 | 43 |
| unnamed | AAL57519.1 | transposase 1 | Not tested | LEE | Protein | 1e-45 | 43 |
| unnamed | AAL57581.1 | transposase 1 | Not tested | LEE | Protein | 6e-46 | 43 |
| ECO111_3732 | YP_003236068.1 | putative IS3 transposase InsF | Not tested | LEE | Protein | 7e-45 | 43 |
| tnpB | CAB61574.1 | transposase B | Not tested | HPI | Protein | 1e-39 | 42 |
| trp1329B | CAB46576.1 | IS1329 transposase B | Not tested | HPI | Protein | 6e-40 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rpic12D_5327 | YP_002973795.1 | Integrase catalytic region | VFG1706 | Protein | 3e-58 | 44 |
| Rpic12D_5327 | YP_002973795.1 | Integrase catalytic region | VFG1631 | Protein | 7e-46 | 43 |
