Gene Information

Name : yfeD (Bgr_00850)
Accession : YP_002971148.1
Strain : Bartonella grahamii as4aup
Genome accession: NC_012846
Putative virulence/resistance : Virulence
Product : iron transport system membrane protein YfeD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 119096 - 120001 bp
Length : 906 bp
Strand : -
Note : -

DNA sequence : 
ATGATTGATCAATTACTACTTCCGTTTCAGTTTTCTTTTATGCTTAAGGGTATGCTTATTGTCATGATTCTTTCTATTCC
CATGGCGATGCTTTCCTGTTTTCTTATTTTGAAAGGATGGGCGCTGTTAGGCGATGCCATTTCTCATGCAGTTTTTCCAG
GTGTTGTTGTTGGTTATATGACAACACCATGGGTAATCGCATTTTTGACTTCTTTGCCATTTGCTTGGTTTCAACATATG
CGTCCAGAGAATATTACAATGACTCTGATTACTTGCGGTGCTTTTGTTGCAGGAATGGTGTGTGCACTATTAACGGGTTT
TTTAGGAAGCAATAGCCGTATCAAACAGGACACGGTGATGGGTGTGGTCTTTTCTTCGATGTTTGGTTTGGGGCTTGTTT
TAGCCACGTCTATTTATAGTAGCTTAGATTTGAATCATATTCTATTTGGTAATCTTTTAGGTGTTAACTGGCTTGATATA
ACACAAACGGCGATCATTTCTGCTGTTGTCACTTTCATTTTAGCAGCAAAATGGCGCGACTTTATGTTGTATATTTTTGA
TACAGTTCAAGGACATGCAATGGGGTTACCAATATCCCTACTTCACTATACCCTTCTAACGATGATTTCTCTTACAATTG
TTGCGGCTTTGAAAGCTGTAGGTATCGTGCTCGTTATTTCTTTACTGATAGCACCAGGAGCAATTGCCTATCTTGTTACA
AAGCGGTTTTCTTTTATGTTAATGATCGCGATACTTGTTGCAGCTTTTTCTGGTTTTTTAGGGATTTATCTCAGCTTATT
TATCGGCTCTGATTCTGCTTCCACAATTGTGTTGATCTTGACGTTGATTTTTATGGCTATTTTCATGATGATTTTTTTTC
GTCAAAACACAGTTCAAGAAACTTAA

Protein sequence : 
MIDQLLLPFQFSFMLKGMLIVMILSIPMAMLSCFLILKGWALLGDAISHAVFPGVVVGYMTTPWVIAFLTSLPFAWFQHM
RPENITMTLITCGAFVAGMVCALLTGFLGSNSRIKQDTVMGVVFSSMFGLGLVLATSIYSSLDLNHILFGNLLGVNWLDI
TQTAIISAVVTFILAAKWRDFMLYIFDTVQGHAMGLPISLLHYTLLTMISLTIVAALKAVGIVLVISLLIAPGAIAYLVT
KRFSFMLMIAILVAAFSGFLGIYLSLFIGSDSASTIVLILTLIFMAIFMMIFFRQNTVQET

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-58 51
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-58 51
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-58 51
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-58 51
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 8e-59 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_002971148.1 iron transport system membrane protein YfeD BAC0352 Protein 5e-59 51
yfeD YP_002971148.1 iron transport system membrane protein YfeD BAC0442 Protein 2e-50 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_002971148.1 iron transport system membrane protein YfeD VFG0528 Protein 5e-59 51