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Name : clpC (Balat_0665) Accession : YP_002969667.1 Strain : Bifidobacterium animalis DSM 10140 Genome accession: NC_012815 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 781407 - 783959 bp Length : 2553 bp Strand : + Note : COG0542 ATPases with chaperone activity, ATP-binding subunit DNA sequence : ATGTTCGAACGGTTTACCGACCGTGCGCGCCGGGTCATCGTGCTCGCGCAGGAAGAGGCTCGTGCCCTCCAGCACAATTA CATCGGCACCGAGCATCTGCTGCTTGGGCTGATTCGTGAGGGAGATGGCGTGGCCGCCAAGGCTCTCGAAGCCAAAGGCG TGACGTTGGAAGACACCCGCAAGCAGGTCGAGGAGATGATCGGCAAGGGCACCGCGGCTCCGACAGGCCACATTCCCTTC ACTCCGCATGCCAAGCAGGTGCTGGAGCTCTCGCTGCGTGAAGCGTTGCAGCTGGGGCATAGCTACATCGGAACCGAACA TATTCTGTTGGGCCTCATTCGTGAGGGTGAGGGCGTGGGCACCCAGGTGCTCATCAAGATGGACGTCGATCTTTCCGACC TGCGCAGCACCACGATCGACATGATTCGCGGCAACTCCGGCAACGGTGAGGGAGACAAGGGCGACATGGCCAACGCGGGT TCCGTGCAGGACAAGCGCAGCCAGAGCGGTTCCGCCATACTGGATCAGTTCGGGCGCAACCTGACGGCCGAGGCGAAGGA CGGCAAACTCGACCCGGTCATCGGCCGCAGCACTGAGATCGAACGCGTCATGGTGGTGCTTTCGCGCCGTACGAAGAACA ATCCGGTGCTGATTGGTGAGCCGGGCGTCGGCAAGACGGCGGTGGTCGAGGGACTTGCGCAGAAGATCGTCGCCGGTGAT GTGCCGGAGACGCTCAAGGACAAGCAGGTGTATTCGCTCGATCTGGGTTCCATGGTCGCGGGATCGCGGTATCGCGGTGA TTTTGAGGAACGCTTGAAGAAGGTGCTCAAGGAGATCAAGACCCGCGGCGACATCGTGCTGTTCATCGATGAGATTCATA CGATTGTGGGAGCTGGCTCCGCGGACGGGGCTCTCGGTGCCTCCGATATGCTCAAACCGATGCTGGCGCGCGGCGAGCTC CAGACCATTGGCGCCACGACCACCGACGAGTACCGCAAGTACATCGAGAAGGACGCCGCCTTGGAACGCCGATTCCAGCC GATCCAGGTGTCGGAACCGTCGATTGCCGAGACGATTGAGATCCTCAAGGGGTTGCGTGCACGCTACGAGAATCACCACC ATGTGACGATCACCGATGGTGCACTGCAGTCTGCCGCAGAACTTTCGGCACGGTACATTCAGGACCGCAACCTTCCCGAT AAGGCAATCGATTTGATCGATGAGGCGGGTGCGCGTCTGCGCATCAAGCGCCTTACCGCGCCTCCGGAGCTCAAGGAGCT TGACAACCGCATTGCGCGCATCGCCAAGGAGAAGGACCAGACGATCAAGGACCAGCAGTTCGAGAAGGCCGCCGAGCTTC GCGACAAGCAGGAGAAGCTTGAGGCTGAGCGCAAAGAGAAAGAGAAGTCCTGGCGTGAGGGCGAATCCGACGTCCGTATG GTCGTCGATGAGGATGTGATCGCCGAGGTGATCTCGCAGAGCACGGGCATTCCGGTGTTCAAGCTCACCCAGGCGGAATC CAAGAAGCTCATGTCGATGGAGAAGGAGCTGCATAAGCGCATCATCGGTCAGGATGAGGCCGTCTCTGCGCTGTCGCGCT CCATCCGCCGTACACGTGTGGGACTCAAGGACCCGAAGCGTCCGGCGGGATCGTTCATCTTCGCCGGCCCCACCGGCGTG GGCAAGACCGAACTTGCCAAGGCTCTCGCTCAGTTCCTGTTCGACGATGAGGATGCGCTCATTCGCGTCGACATGTCGGA GTTCTCAGAAAAGTACGCGGCTTCGCGTCTGTTCGGAGCCCCTCCGGGATATGTCGGTTATGAGGAGGGTGGTGAGCTCA CCGAGAAGGTGCGCCGCAAGCCGTTCTCCGTCGTGCTGTTCGATGAGATCGAAAAGGCCCATCCCGACATCTTCAACACA TTGCTGCAGGTGTTGGATGACGGCCACTTGACCGATGGCCAGGGGCGCAAAGTGGACTTCAAGAACACCATCATCATTTT GACGACCAATCTCGGCACGCGTGACATCGCGAAGACCGCCAATACAGGCTTCACGATGGGGGGCAACACCGAATCGAGCT ATCAGCGCATGAAGGACCAGGTGTCGAGCGAGCTCAAGCAGCAGTTCCGCCCCGAGTTCCTCAACCGTTTGGATGACATC ATCGTGTTCCGCCAGCTCACCGAACCGCAGGTGCGCCAGATCGTCGATCTCGATGTCACGAAGATCAACGATCGTCTGTT CGAACGTCATATGGAGCTCGACCTGACCGATAAGGCCAAGGATTTGCTCGCGGAAAAGGGCTTCGACCCGTTGCTTGGTG CCCGACCGCTACGTCGTGTGATTCAGCGTGATATCGAGGACACCATTTCCGAAAAGATTCTCATGGGCGATCTGCACGAC AACGAACGTGTGATCGTCGATGCCGAAGGTGATGGCATTCTCGGGGAGTTCACGTTCCGCGGCGAGCCTTTCGAGCTCCC GGCGGCAGGCGAAGGGGACGAGTCGAAGGATGTCGTGCCCGAACCTGCGGCTGCGGCGAGTGAGGCCGAATAA Protein sequence : MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGDGVAAKALEAKGVTLEDTRKQVEEMIGKGTAAPTGHIPF TPHAKQVLELSLREALQLGHSYIGTEHILLGLIREGEGVGTQVLIKMDVDLSDLRSTTIDMIRGNSGNGEGDKGDMANAG SVQDKRSQSGSAILDQFGRNLTAEAKDGKLDPVIGRSTEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKIVAGD VPETLKDKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSADGALGASDMLKPMLARGEL QTIGATTTDEYRKYIEKDAALERRFQPIQVSEPSIAETIEILKGLRARYENHHHVTITDGALQSAAELSARYIQDRNLPD KAIDLIDEAGARLRIKRLTAPPELKELDNRIARIAKEKDQTIKDQQFEKAAELRDKQEKLEAERKEKEKSWREGESDVRM VVDEDVIAEVISQSTGIPVFKLTQAESKKLMSMEKELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPAGSFIFAGPTGV GKTELAKALAQFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFNT LLQVLDDGHLTDGQGRKVDFKNTIIILTTNLGTRDIAKTANTGFTMGGNTESSYQRMKDQVSSELKQQFRPEFLNRLDDI IVFRQLTEPQVRQIVDLDVTKINDRLFERHMELDLTDKAKDLLAEKGFDPLLGARPLRRVIQRDIEDTISEKILMGDLHD NERVIVDAEGDGILGEFTFRGEPFELPAAGEGDESKDVVPEPAAAASEAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_002969667.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0079 | Protein | 0.0 | 57 |
| clpC | YP_002969667.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0080 | Protein | 5e-140 | 50 |
