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Name : lysS (Balat_0437) Accession : YP_002969446.1 Strain : Bifidobacterium animalis DSM 10140 Genome accession: NC_012815 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 516538 - 518154 bp Length : 1617 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : GTGGCCGCCCCCGAGATGAGCACCGTGGAACGCGCGGAAATGCTGCTCAACCAGGACGAGGCGATTTTCAAGCGCGTGCA GGAGGGCGCCTCGCTCGACGAGGCCGTGGATCCGTCGAACAAGGAATTCGGACCGCTCGCGCACCCGGAGCAGGTGCAGA CCCGTGTGGCCAAGCGTGCGATGATGATCAAGGACGGTATCAATCCGTACCCGGTGAATCTCGACGTCACCACGACCATC GACGCCGTGCGTGTCAAGTATGACGGCAAGCTCGAAGCGGGCGCCGAGACCGACGACATCGTCGGCGTGGCGGGCCGCGT GCTGTTCATTCGCAATGCGGGCGGACTGTGCTTCGTGCAGCTCGCCGCCGGCGATGGCACGACGATCCAGGCCATGCTCT CGAAGAAGCAGATCGGCGCGGATTCGCTCAAGCAGTTCAAGCAGCTGGTGGATCTGGGCGACCACCTGTTCGTCAAAGGT CGTGTGATCGCATCGAAGACCGGCGAGCTGTCGATCTTCGCCGATGAGTGGGCCATCGCCGCCAAGGCGCTGCAGCCGCT GCCGACGCTGCATAAGGAACTCAACGAAGACACCCGCACGCGCAAGCCGTACATCGGCATGATCGCCGACGAGAAGATTC GCAACATGGTGCGCAATCGTTCCCGTGCGGTCGCCTCGCTGCGCCGCACCTTCGACGAACACGGATTCCTCGAGGTGGAG ACTCCGATGCTGCAGACCATTCACGGTGGTGCCGCGGCTCGTCCGTTCACCACGCATATGAACGCCTTCGACCTTGATCT CTACCTGCGCATCGCGCCCGAGCTCTTCCTCAAGCGCTGCCTCGTGGGTGGCATCGAGAAGGTGTTCGAGATCAACCGCG ACTTCCGCAACGAGGGCGTGGACGCCACGCACGCGCCGGAATTCACGATGGTCGAGGCTTATGAGGCCTACGGCAACTAC GACACGATCGCCAAGCTCGTCAAGGAGCTGATCCAGAAGACCGCCATCGACGTGTTCGGCTCCACCAAGGTGACGCTGCT CGACGGCACCGAGTACGACTTCGGCGGCGAATGGAAGACGATGAGCATGTACGACTCGCTGTCGGAGGCGCTCGGCCAGC AGATCACGCCGGAGACCAGCGTTGAGGAGCTCGGTGCGATCGCCGACCGTCTGGGCGTGGAGCGCGACGAGGTGGAGAAC CACGGCAAGCTCGTCGAACACCTGTGGGAGCACTTCTACGAAGACAAGCTGTACGAGCCGACCTTCGTGCGCGACTTCCC GGTGGAGACCTCGCCGCTTGTCAAGGCGCACCGCAGCAAGCCCGGCGTGGTGGAGAAGTGGGACCTCTACGTGCGCGGCT TCGAGCTCGCGACCGGCTACTCCGAGCTCAACGACCCGATCGTGCAGCGTGAGCGCTTCGTGGCACAGGCCAAGGATGCT CTCGCCGGTGACGAGGAGGCCTGCGACATCGATGAGGACTTCCTCGAGGCGCTCGGCGTCGGCATGCCGCCGGCAGGTGG CATGGGCATGGGCATCGACCGTCTGCTCATCGCGCTCACCGGCGCCACGATCCGCGAGACGATCACGTTCCCGCTGGTCA AGCCGCTCAACAACTGA Protein sequence : MAAPEMSTVERAEMLLNQDEAIFKRVQEGASLDEAVDPSNKEFGPLAHPEQVQTRVAKRAMMIKDGINPYPVNLDVTTTI DAVRVKYDGKLEAGAETDDIVGVAGRVLFIRNAGGLCFVQLAAGDGTTIQAMLSKKQIGADSLKQFKQLVDLGDHLFVKG RVIASKTGELSIFADEWAIAAKALQPLPTLHKELNEDTRTRKPYIGMIADEKIRNMVRNRSRAVASLRRTFDEHGFLEVE TPMLQTIHGGAAARPFTTHMNAFDLDLYLRIAPELFLKRCLVGGIEKVFEINRDFRNEGVDATHAPEFTMVEAYEAYGNY DTIAKLVKELIQKTAIDVFGSTKVTLLDGTEYDFGGEWKTMSMYDSLSEALGQQITPETSVEELGAIADRLGVERDEVEN HGKLVEHLWEHFYEDKLYEPTFVRDFPVETSPLVKAHRSKPGVVEKWDLYVRGFELATGYSELNDPIVQRERFVAQAKDA LAGDEEACDIDEDFLEALGVGMPPAGGMGMGIDRLLIALTGATIRETITFPLVKPLNN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-136 | 56 |
