Gene Information

Name : rph (Balac_0286)
Accession : YP_002967739.1
Strain : Bifidobacterium animalis Bl-04
Genome accession: NC_012814
Putative virulence/resistance : Unknown
Product : ribonuclease PH
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0689
EC number : -
Position : 353043 - 353735 bp
Length : 693 bp
Strand : +
Note : RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs

DNA sequence :
GTGCGCATCACCCGCGCATTCACCGACGTGCCGGAAGGATCCGTGCTCATTGAATGCGGCAACACGCGCGTGATGTGCAC
CGCCACGTTCACCGACACCGTGCCGCGCTGGCGCAAGGACTCCGGGCTCGGTTGGGTCACTGCGGAGTATTCGATGCTGC
CGCGCGCCACCGCACAGCGCACCGACCGTGAATCGGTTCGCGGCAAGGTGGGCGGCCGCACCCATGAGATCTCCAGACTC
ATCGGCCGATGCCTGCGCGGCGTGATTGACATGAAGGCGCTCGGCGAGAACACGATCCAGATGGATTGCGACGTGCTCCA
GGCCGACGGCGGCACGCGCACCGCGTCGATCACCGGAGCGCACGTGGCCCTCGTGGACGCCCTCAACTGGGCGAAGCAGA
ACGGCAAGATCAAAAGCGTGAAGAACGTGCTGCTCGACAGCGTCTCCGCCGTGTCGGTGGGCGTGATCGACGGCGAACCG
ATGCTCGACCTGCCGTACGTCGAAGACAGCCGCGCAATGACCGACATGAACGTCGCAATGACCGGATCCGGCAAATTCGT
TGAGATTCAGGGCACCGCCGAACATCGCCCATTCAGCCGCAACGAGCTCGGCGTGCTGCTCGACCTCGCCACCAAGGGCA
ATAGGGAACTCCAAGCCGCACAGCAGGCCGCGCTCGACGCCGACCTGCGCTAG

Protein sequence :
MRITRAFTDVPEGSVLIECGNTRVMCTATFTDTVPRWRKDSGLGWVTAEYSMLPRATAQRTDRESVRGKVGGRTHEISRL
IGRCLRGVIDMKALGENTIQMDCDVLQADGGTRTASITGAHVALVDALNWAKQNGKIKSVKNVLLDSVSAVSVGVIDGEP
MLDLPYVEDSRAMTDMNVAMTGSGKFVEIQGTAEHRPFSRNELGVLLDLATKGNRELQAAQQAALDADLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
rph YP_001800860.1 ribonuclease PH Not tested Not named Protein 3e-58 63