Gene Information

Name : fliP (DMR_46200)
Accession : YP_002955997.1
Strain : Desulfovibrio magneticus RS-1
Genome accession: NC_012796
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 5238333 - 5239094 bp
Length : 762 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :

ATGACGCGCCCTAGCCACTTGTTGGCCCTAGCGTTTTTCGGGGCGCTGTTGGCCCTCCCGACCCTGGCCCTGGCCCAGGA
CGCGCCGTCGCTGACGCTCTCCCTGGCCGCCGGACAGACCTCGCCCGAACGCGTCTCCACCCTGCTCGAAATCCTGTTCG
CCCTGACCGTCCTGTCCCTGGCCCCGTCGTTCGTGCTGACCGTCACCTCGTTTACCCGCATCATCGTGGTGTTTTCGTTT
TTGCGCCAGGCCATGGGCGTGCAGCAGGTGCCGCCCACGCAAATCCTGGCCAGCCTCGCCATTTTTCTGACGGCCGTCAT
CATGTACCCCACCGGCAAGGCGATAAACGACAACGCCCTGCAACCCTACATGAACGAGGAAATCGGCTTCACCGAGGCCC
TCAAAAAAGCCGAAGCGCCGCTGCGCGAATTCCTCTTCAAACACACCCGCGAAAAAGACCTGTCCGTCTTCTACACCATC
ACCAAGATGGAACGCCCCAAAGACAAAGGCGAAGTGCCCACCATCATGCTGGCCGCCGGGTTCATGATCAGCGAGCTCAA
GACCGCGTTTACCATCGGCTTTCTCATCTATATCCCGTTTCTCATCCTCGACATGGTCATCTCGTCCATCCTGCTGGCCA
TGGGCATGATGATGCTGCCGCCGGCCACCATCGCCATGCCGTTCAAACTGCTGCTGTTCGTGCTCGTGGATGGTTGGGGT
TTGATCGTGGCTTCGCTGGTCAACTCGTTTACGACGACGTGA

Protein sequence :

MTRPSHLLALAFFGALLALPTLALAQDAPSLTLSLAAGQTSPERVSTLLEILFALTVLSLAPSFVLTVTSFTRIIVVFSF
LRQAMGVQQVPPTQILASLAIFLTAVIMYPTGKAINDNALQPYMNEEIGFTEALKKAEAPLREFLFKHTREKDLSVFYTI
TKMERPKDKGEVPTIMLAAGFMISELKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPPATIAMPFKLLLFVLVDGWG
LIVASLVNSFTTT

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
ssaR	CAA68199.1	secretion system apparatus, SsaR	Virulence	SPI-2	Protein	6e-28	44
yscR	NP_456109.1	putative type III secretion protein	Virulence	SPI-2	Protein	4e-27	44
yscR	NP_805090.1	type III secretion system protein	Virulence	SPI-2	Protein	4e-27	44
ssaR	YP_216427.1	type III secretion system protein	Virulence	SPI-2	Protein	9e-28	44
ssaR	NP_460384.1	type III secretion system protein	Virulence	SPI-2	Protein	9e-28	44
escR	AFO66317.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	3e-24	43
escR	AFO66400.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	3e-24	43
lscR	AAO18040.1	LscR	Virulence	TTSS locus	Protein	4e-25	43
escR	YP_003232138.1	type III secretion system protein	Virulence	LEE	Protein	6e-23	43
escR	AAK26700.1	EscR	Virulence	LEE	Protein	4e-23	43
escR	YP_003236103.1	T3SS structure protein EscR	Virulence	LEE	Protein	5e-23	43
escR	AAL57527.1	EscR	Virulence	LEE	Protein	4e-23	43
escR	NP_290283.1	type III secretion system protein	Virulence	LEE	Protein	5e-23	43
escR	CAC81847.1	EscR protein	Virulence	LEE II	Protein	4e-23	43
escR	CAI43889.1	EscR protein	Virulence	LEE	Protein	4e-23	43
escR	AAC31528.1	L0049	Virulence	LEE	Protein	4e-23	43
escR	ACU09473.1	type III secretion system protein EscR	Virulence	LEE	Protein	4e-23	43
ECs4583	NP_312610.1	type III secretion system protein	Virulence	LEE	Protein	2e-22	43
escR	YP_003223490.1	T3SS structure protein EscR	Virulence	LEE	Protein	6e-23	43
escR	AAC38369.1	EscR	Virulence	LEE	Protein	2e-22	43

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
fliP	YP_002955997.1	flagellar biosynthesis protein FliP	VFG1259	Protein	3e-47	51
fliP	YP_002955997.1	flagellar biosynthesis protein FliP	VFG2016	Protein	2e-44	49
fliP	YP_002955997.1	flagellar biosynthesis protein FliP	VFG2494	Protein	2e-41	48
fliP	YP_002955997.1	flagellar biosynthesis protein FliP	VFG2338	Protein	4e-37	46
fliP	YP_002955997.1	flagellar biosynthesis protein FliP	VFG0394	Protein	8e-25	45
fliP	YP_002955997.1	flagellar biosynthesis protein FliP	VFG0519	Protein	4e-28	44
fliP	YP_002955997.1	flagellar biosynthesis protein FliP	VFG0188	Protein	1e-26	43
fliP	YP_002955997.1	flagellar biosynthesis protein FliP	VFG0715	Protein	1e-22	43
fliP	YP_002955997.1	flagellar biosynthesis protein FliP	VFG0827	Protein	2e-23	43