Gene Information

Name : DMR_45900 (DMR_45900)
Accession : YP_002955967.1
Strain : Desulfovibrio magneticus RS-1
Genome accession: NC_012796
Putative virulence/resistance : Virulence
Product : OmpR family two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5202695 - 5203366 bp
Length : 672 bp
Strand : -
Note : -

DNA sequence :
ATGCGCATCCTCCTCGTCGAGGACGACGAGAAAATCGCCTCCTTCATCCTTGGCGGCCTGCGCCAGAGCGGGTTTGCCGT
GGACCATGCGGCAAACGGCCCCGACGGCCTGCATCTGGCCGCCACCGAGCCCTACTGCGTGGCCATCATCGACGTCATGC
TGCCCGGCCTGGACGGCTTGCAGGTCATTGAAGAACTGCGCCGCCGCAAAATCATGACCCCCATCATCATCCTTTCGGCC
AAGCGGTCGGTGGAGGACCGGGTGCGGGGCCTTGAAACCGGCGGCGACGATTATCTGTCCAAGCCCTTTTCCTTTGCCGA
ACTCCTGGCCCGGGTCCAGGCGCTGATCCGCCGTTCCACCAGCGCTTCGGAGCCCACCCGCCTGACCGTGGGCGAGCTGT
CCATGAACCTGCTCACCCGGGAGGTGTCCCGGGGCGAGACGGCCGTGCAGCTCCAGCCCAGGGAGTTCGCCCTGCTTGAA
TACTTCATGCGCAATCCCGGCAAGGTGCTGTCCAAGACCATGATCATGGAGCACGTCTGGGACTACCACTTCGATCCCCA
GACCAATCTCGTGGACGTCCTCGTCTGCCGACTGCGCAACAAGATCGACCGGGACTACGACCGGAAGATGCTCCATACCC
TGCGCGGGGTCGGCTATGTTCTCAAGGAATAG

Protein sequence :
MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGLQVIEELRRRKIMTPIIILSA
KRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRSTSASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLE
YFMRNPGKVLSKTMIMEHVWDYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVLKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-47 48
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-46 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DMR_45900 YP_002955967.1 OmpR family two-component response regulator BAC0125 Protein 1e-51 52
DMR_45900 YP_002955967.1 OmpR family two-component response regulator BAC0347 Protein 4e-50 48
DMR_45900 YP_002955967.1 OmpR family two-component response regulator BAC0083 Protein 1e-53 48
DMR_45900 YP_002955967.1 OmpR family two-component response regulator BAC0197 Protein 2e-49 48
DMR_45900 YP_002955967.1 OmpR family two-component response regulator BAC0638 Protein 6e-48 48
DMR_45900 YP_002955967.1 OmpR family two-component response regulator BAC0111 Protein 3e-54 47
DMR_45900 YP_002955967.1 OmpR family two-component response regulator BAC0308 Protein 5e-47 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DMR_45900 YP_002955967.1 OmpR family two-component response regulator VFG0596 Protein 9e-48 48
DMR_45900 YP_002955967.1 OmpR family two-component response regulator VFG1389 Protein 6e-39 44
DMR_45900 YP_002955967.1 OmpR family two-component response regulator VFG1386 Protein 9e-43 43
DMR_45900 YP_002955967.1 OmpR family two-component response regulator VFG1390 Protein 3e-42 41