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Name : hsdM (DMR_15190) Accession : YP_002952896.1 Strain : Desulfovibrio magneticus RS-1 Genome accession: NC_012796 Putative virulence/resistance : Unknown Product : type I restriction enzyme M protein Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : - Position : 1672819 - 1674414 bp Length : 1596 bp Strand : + Note : - DNA sequence : ATGCCGGAGCGTACATCCCCCAAGCCCAAAGGGCGAACTCCTAAGCCTGCTGGCACCGCCAACGGTAAAAGCAACGGGAC GGGTGCAAATCTCGGCTTTGAGGGCGAGCTTTTCAAGGCCGCTGACAAGCTCCGGGGCAATATGGAGCCCTCGGACTACA AGCACGTCGCGCTGGGCCTGATCTTCCTCAAGCACATTTCCGATAGCTTTGAAGCCAAGCATGCGGCCCTGACGGCCGAA GACCCATCCTGCGCCGAGGACCCGGACGAGTATCTGGCCGAAAACATCTTCTGGGTGCCCAAGGAAGCTCGCTGGTCCCA TCTCCAGGCCAACGCCAAGCAGCCCGGCATTGGTAAGATCGTCGATGACGCCCTGGTTGCCATCGAGGCCAAGAACGAGA GCCTCAAGGGTGTGCTGCCCAAGGATTATGCCCGGCCTGCCCTCAATAAGGTGATGCTCGGGGAGTTGATCGACCTCATC TCCGGCATCGGCCTTGGGACCGAGCAGGGGCAGTCCAGGGACGTCCTGGGCCGGGTCTACGAATATTTCCTCAGCCAGTT TGCCGGCTCGGAAGGTAAGCGCGGGGGCGAGTTCTATACGCCCCGGTCCGTGGTCCGGGTGCTGGTCGATATGCTGGAGC CCTTCAAGGGCCGCGTCTACGACCCCTGCTGCGGTTCCGGCGGTATGTTCGTCCAGTCCAACAAGTTCGTGGCCGAGCAC GGCGGCCGCCTCGGCGACATCGCCATTTACGGGCAGGAGTCGAACTACACCACGTGGCGGCTGTGCAAGATGAACTTGGC TGTCCGGGGCATCGACTCTGACATCCGCTGGAACAGCGAGGGCAGCTTCCACAAGGATGAACTCAAGGACCTGCGGGCCG ACTTCATCCTGGCCAATCCTCCCTTCAATATTTCCGACTGGGGCGGGGAGCGGTTGCGGGAAGATGTACGCTGGAGTTTC GGCATCCCGCCTGCCGGGAACGCCAACTTCGCTTGGTTGCAGCATATCTTTCACCATCTTGGTCCGAACGGGACGGCCGG CGTGGTTCTGGCCAACGGCTCCATGTCGTCGAGCCAGTCCGGTGAAGGTGACATCCGCAAGGCCATGCTCGAAGCCGACG TAGTGGATTGCATGATCGCCCTGCCTGGGCAGCTATTCTATTCGACCCAGATTCCGGCCTGCCTGTGGTTTCTGGCTCGC GACAAGGCCAACCACGGCTTCAGGGACCGCCGGGGTGAGGTGCTTTTCATCGACGCCCGCAAGCTCGGTCATCTGGTTGA CCGCACCCGTCGGGAGTTCTCGGCCGAGGACATCGCCAAGATAGCTGGCACCTACCACGCATGGCGCGGTGAGAAGGACA CGGGTGAATATGAGGACGTGCCCGGCTTCTGCAAGGCAGCTTCGTTGGAGGAGATCAAGGGCCATGGCTATGTGCTGACG CCGGGGCGCTATGTCGGGGCCGAGGTCGTGGATGATGACGACACGCCCTTTGAGGAGCGATTTGTCGCGCTCAAGGAGAG GCTGGAGGGGCAGTTTGTCGATGCGGAGAGGTTGACTGCGACGATTCGGGTACGGTTAGGGCTTTTAGATGTCTAG Protein sequence : MPERTSPKPKGRTPKPAGTANGKSNGTGANLGFEGELFKAADKLRGNMEPSDYKHVALGLIFLKHISDSFEAKHAALTAE DPSCAEDPDEYLAENIFWVPKEARWSHLQANAKQPGIGKIVDDALVAIEAKNESLKGVLPKDYARPALNKVMLGELIDLI SGIGLGTEQGQSRDVLGRVYEYFLSQFAGSEGKRGGEFYTPRSVVRVLVDMLEPFKGRVYDPCCGSGGMFVQSNKFVAEH GGRLGDIAIYGQESNYTTWRLCKMNLAVRGIDSDIRWNSEGSFHKDELKDLRADFILANPPFNISDWGGERLREDVRWSF GIPPAGNANFAWLQHIFHHLGPNGTAGVVLANGSMSSSQSGEGDIRKAMLEADVVDCMIALPGQLFYSTQIPACLWFLAR DKANHGFRDRRGEVLFIDARKLGHLVDRTRREFSAEDIAKIAGTYHAWRGEKDTGEYEDVPGFCKAASLEEIKGHGYVLT PGRYVGAEVVDDDDTPFEERFVALKERLEGQFVDAERLTATIRVRLGLLDV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 3e-159 | 61 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 6e-159 | 60 |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 2e-158 | 60 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 6e-119 | 46 |
