Gene Information

Name : Vapar_4495 (Vapar_4495)
Accession : YP_002946372.1
Strain :
Genome accession: NC_012791
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 4743621 - 4744850 bp
Length : 1230 bp
Strand : +
Note : PFAM: integrase family protein; KEGG: har:HEAR0701 integrase

DNA sequence : 
ATGGCACTGACAGACACGTTTGTTAGGCAGGTGAAGCCCACCGGGAAGGCCAACGGCGACAAATATGCCGACGGCGCCGG
CATGTACCTGCTGGTGAAGACTGCCGGGAAATACTGGCGAATGGATTACACCTTCGCCGGCAAGCGGAAAACGCTGGCGC
TGGGGACCTACCCGGAGGTCTCGCTGGCCAAAGCCCGGGATCGCCGCGCCGCCGCCCGCGAGCTGCTGGCGGACGGGACC
GACCCGAGCGCGGCCAAGCGCGAAGAAAAGAGAGCCCGAGCCGACGCGGCGGCGAATACGTTCGAGGCGGTTGCGCGCGA
GTGGCTGGGAAAGACCGCGGCCAAACGAGCGAGTGGAACGCAGCTCAAGGTCAAGACATGGCTCGAGAAGGACGTGTTCC
CCTTCATCGGCAAGATGCCCATCTCCACCATCGGTCCGCGCGACATTCTGGAGCGGGTGGTCCGCAAGCTGGAAGCACGC
GGCGCCATCGATACCGCCCATCGCGTCAAGCAGCTTTGCGGGCAGGTGTTTCGCTTCGCAGTGGTGTCAGGACTGGCAGA
GAGGGACGTGACCGCCGATCTGAGCGAAGCTCTGGCCTCGAAAGCGACCAGGCACTTCGCCGCCATCACCGAGCCCAAGA
GAGTCGGCGACCTGATGCGCTCGATCCATGCCTACAGCGGCCACCCCACCACCGTTGCCGCGCTGAAGCTTTCCCCTCTG
CTGTTTGTCCGGCCCGGCGAGTTGCGCACCGCGGAATGGGCCGAGATCGACCTGGACGCGGCCGAGTGGCGCATCGCCGG
CCCGAAGATGAAAATGAAGGTCGATCATGTCGTGCCGCTCGCAACCCAGGCGGTGGAGATCCTGCGCGACCTCCACCCAA
TCACAGGGCATGGACGGTTTGTGTTTCCGAGCATACGGACGGGTGAACGCCCCATGAGCGAGAACACCATCAATGCCGCC
CTGCGTGGAATGGGCTACAGCGCCGAAGTCCACACGGCTCACGGCTTCAGGGCAACCGCGCGGACCATCATGGATGAGGT
GCTTGGCGAGCGCGTGGACTTCATCGAGCACCAGCTCTCCCACATGGTCAGGGATACCAACGGTCGTGCGTACAACCGCA
CTGCGCATCTCCCCGCGCGCCGGGAAATGATGCAGCGCTGGGCGGACTACCTGGACAAGCTGCGCATCGGTGCCGACCTG
ATTCCGTTGAAGCCGCGCCAGATGACATAG

Protein sequence : 
MALTDTFVRQVKPTGKANGDKYADGAGMYLLVKTAGKYWRMDYTFAGKRKTLALGTYPEVSLAKARDRRAAARELLADGT
DPSAAKREEKRARADAAANTFEAVAREWLGKTAAKRASGTQLKVKTWLEKDVFPFIGKMPISTIGPRDILERVVRKLEAR
GAIDTAHRVKQLCGQVFRFAVVSGLAERDVTADLSEALASKATRHFAAITEPKRVGDLMRSIHAYSGHPTTVAALKLSPL
LFVRPGELRTAEWAEIDLDAAEWRIAGPKMKMKVDHVVPLATQAVEILRDLHPITGHGRFVFPSIRTGERPMSENTINAA
LRGMGYSAEVHTAHGFRATARTIMDEVLGERVDFIEHQLSHMVRDTNGRAYNRTAHLPARREMMQRWADYLDKLRIGADL
IPLKPRQMT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAD44730.1 Int Not tested SHI-2 Protein 1e-63 44
int CAC39282.1 integrase Not tested LPA Protein 6e-64 44
aec33 AAW51716.1 Int Not tested AGI-3 Protein 5e-64 44
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-63 43
int ACU09430.1 integrase Not tested LEE Protein 2e-63 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-63 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-63 43
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 7e-62 43
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 7e-62 43
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 5e-62 43
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 6e-63 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 3e-55 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 3e-55 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-55 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-54 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 3e-54 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 7e-55 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 7e-55 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-54 41
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-59 41
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-59 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Vapar_4495 YP_002946372.1 integrase family protein VFG0783 Protein 1e-63 43
Vapar_4495 YP_002946372.1 integrase family protein VFG0598 Protein 3e-62 43