Gene Information

Name : Vapar_4178 (Vapar_4178)
Accession : YP_002946057.1
Strain :
Genome accession: NC_012791
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 4418923 - 4419684 bp
Length : 762 bp
Strand : +
Note : TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: reu:Reut_B5881 flagellar biosynthesis protein FliP

DNA sequence : 
ATGATGCGCACCGTCCGCCAACGAAGCCTTGCCGGCTTCGCGCTGATGCTGCTCGCCCTCGCGCTGCCGACGGCGGCGTC
GGCTCAGGGCCTGCCCGGCCTCACCAGCACGCCCGGCCCGGGCGGCAGCCAGACCTGGTCGCTCAGCGTGCAGACGCTGG
TGATGCTGACCTCGCTCAGCTTCCTGCCGGCGCTGCTGCTGAGCATGACGAGCTTCACGCGCATCCTCATCGTGCTGGGC
CTGCTGCGCACGGCCATCGGCACGCAGTCGTCGCCGCCCAACCAGATCCTGGTGGGCCTGTCGCTGTTCCTGACCTTCTT
CGTGATGGCGCCGGTGTTCGACAAGGTCCACGACGAGGCCTACAAGCCTTTTTCCGAGAACAAGATCACGGCCGAGAAGG
CGCTCGAGAAAGGCATTGCGCCCTTCAAGTCCTTCATGCTGAAGCAGACGCGCGAGAACGACCTGGCCCTGTTCGCCAGG
CTCGCGAAGATCCCCGACATGCAGGGGCCGGAGGAAGTGCCGCTGCGCATCCTGCTGCCTTCGTTCGTGATCAGCGAGCT
GAAGACCGCGTTCCAGATCGGCTTCACCATCTTCATTCCGTTCCTCATCATCGACCTGGTGGTGGCCAGCGTGCTGATGT
CGATGGGCATGATGATGGTGCCGCCCGCCTCCATCGCGCTGCCCTTCAAGCTGATGCTGTTCGTCATGGCCGATGGCTGG
CAGCTGCTGATCGGCGCACTGGCCCAGAGCTTTTATCTTTAG

Protein sequence : 
MMRTVRQRSLAGFALMLLALALPTAASAQGLPGLTSTPGPGGSQTWSLSVQTLVMLTSLSFLPALLLSMTSFTRILIVLG
LLRTAIGTQSSPPNQILVGLSLFLTFFVMAPVFDKVHDEAYKPFSENKITAEKALEKGIAPFKSFMLKQTRENDLALFAR
LAKIPDMQGPEEVPLRILLPSFVISELKTAFQIGFTIFIPFLIIDLVVASVLMSMGMMMVPPASIALPFKLMLFVMADGW
QLLIGALAQSFYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 5e-33 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 5e-33 44
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-32 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-32 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 9e-33 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-32 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-32 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 5e-32 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 8e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Vapar_4178 YP_002946057.1 flagellar biosynthetic protein FliP VFG2338 Protein 7e-72 75
Vapar_4178 YP_002946057.1 flagellar biosynthetic protein FliP VFG2494 Protein 7e-68 73
Vapar_4178 YP_002946057.1 flagellar biosynthetic protein FliP VFG1259 Protein 1e-58 66
Vapar_4178 YP_002946057.1 flagellar biosynthetic protein FliP VFG2016 Protein 3e-52 58
Vapar_4178 YP_002946057.1 flagellar biosynthetic protein FliP VFG0044 Protein 8e-33 42
Vapar_4178 YP_002946057.1 flagellar biosynthetic protein FliP VFG0394 Protein 2e-31 42