|
Name : Vapar_1926 (Vapar_1926) Accession : YP_002943839.1 Strain : Genome accession: NC_012791 Putative virulence/resistance : Virulence Product : nucleotide sugar dehydrogenase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 2060002 - 2061297 bp Length : 1296 bp Strand : + Note : TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: ajs:Ajs_3014 UDP-glucose/GDP-mannose dehydrogenase DNA sequence : ATGAACTCAAACAACTCCAAAATTGCGGTGATCGGCCTCGGCTATGTCGGTCTGCCGCTTGCCGTTGAATTCGGCAAGAA GCGCGATGTCGTTGGGTTCGACATCAACCCCAAGCGCATTGCCGAACTGAGGGTAGGGCGCGACCACACGCTTGAAACCA CGCCAGAAGAGCTGAAGGCAGCAAGTCGCCTGGCGTTCTCGTCGGATTTGGCCGACTTGCGCGATTGCGAGATTTTCATC GTCACGGTGCCCACCCCCATCGACAACGCCAATCGCCCAGACCTCACGCCATTGATCAAGGCCAGCGAGACGGTCGGCAA AGTCATGCCGGCCGGCGCAATCGTCATCTATGAATCCACTGTGTACCCGGGCGCGACCGAAGAGGTGTGCGTGCCCGTGC TGGAGAAGCACAGCGGCCAGAAATTCAATGTCGACTTTTTCTGCGGCTACAGCCCTGAGCGGATCAATCCCGGCGACAAG GTCAATACGCTGACCAAGATCAAGAAGATCACCAGCGGCTCCACTCCCAAGGTGGCGCAGATCGTCGACCGGCTTTACGC CGAGATCATCACCGCCGGTACCTACCGGGCTTCGAGCATCAAGGTGGCAGAGGCCGCCAAGGTTATCGAGAACACGCAGC GCGACTTGAACATTGCGCTTGTGAATGAGCTTTCCGTCATCTTCGACAGACTGGGCATCGATACGCTCGATGTGCTGGAG GCCGCGGGCAGCAAATGGAATTTCCTGCCTTTCCGGCCCGGTTTGGTTGGAGGGCACTGCATTGGTGTCGACCCTTACTA CCTCACGCACAAGGCCGAGGAAGTCGGCTACCACCCCCAAGTAATTCTTGCGGGCCGGCGCATCAACGACAACATGGCCC GCTACGTGGCGCGCAACACCATCAAGCACATGTTGCGCAACGGCATGGATGTGCCGCGCTGCCGTGTTGGCGTGCTCGGC ATTACCTTCAAGGAAAACTGCCCGGACATTCGCAACAGCAAGATCGTGGACATGGTGCGCGAGTTCGAAACCTGGGGTGT CCAGGTCGTGGTGGCTGACCCGTGGGCCGATTCGGCAGAGGTCGCACACGAATATGGCCTGCAACTGGGCGCCGTGGACT CCGAACATCTGGTGGACGCACTTGTGGTGGCGGTTGGCCACAACGAATACAGACAAACCAACCCTGCCGCGCTGCGCGCC ATGTGCCGCGGCACGAAGCCCGTGCTGGCCGACGTCAAGAGCCTTTTCGACCGGCACCACGCCGCCGAAGCAGGTTTTAC CGTTTTCCGCCTTTGA Protein sequence : MNSNNSKIAVIGLGYVGLPLAVEFGKKRDVVGFDINPKRIAELRVGRDHTLETTPEELKAASRLAFSSDLADLRDCEIFI VTVPTPIDNANRPDLTPLIKASETVGKVMPAGAIVIYESTVYPGATEEVCVPVLEKHSGQKFNVDFFCGYSPERINPGDK VNTLTKIKKITSGSTPKVAQIVDRLYAEIITAGTYRASSIKVAEAAKVIENTQRDLNIALVNELSVIFDRLGIDTLDVLE AAGSKWNFLPFRPGLVGGHCIGVDPYYLTHKAEEVGYHPQVILAGRRINDNMARYVARNTIKHMLRNGMDVPRCRVGVLG ITFKENCPDIRNSKIVDMVREFETWGVQVVVADPWADSAEVAHEYGLQLGAVDSEHLVDALVVAVGHNEYRQTNPAALRA MCRGTKPVLADVKSLFDRHHAAEAGFTVFRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-122 | 61 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-122 | 61 |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-112 | 60 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Vapar_1926 | YP_002943839.1 | nucleotide sugar dehydrogenase | VFG0431 | Protein | 6e-123 | 61 |
