Gene Information

Name : NT01EI_0963 (NT01EI_0963)
Accession : YP_002932411.1
Strain : Edwardsiella ictaluri 93-146
Genome accession: NC_012779
Putative virulence/resistance : Virulence
Product : type III secretion protein, YscU/HrpY family
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4792
EC number : -
Position : 950653 - 951708 bp
Length : 1056 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTGAGAAGACGGAACAGCCTACGGATAAACGCCTGCGCGATGCGCGTGAGGAGGGGCAGGTCGCCAAGAGCCAGGA
TATCGGTGCGACCGTACAGCTGGCCGTCATTTTGCTCTGGATGGTGACAGAGGGGCCGAGGATGTATGCGGCCATCGGTG
GCTTCATCGATGCGACGCTGGCCACGGTGAACCTCCCGTTGCTTGACGCCATGACGTTGCTGACCGGCGAGGCCGCCACG
CTGATGATTCGCTTTGTCTTCGGCCTGGCTATGCTGTTGATTGTGACGCTGATCTTAACCGGATTGGTGGAGACCGGCTT
TTTGTTTGCACCGAAAGCCATCATGCCCTCCGCCGAGCGGATTAGCCCACTGAGTAACGCCAAACAGATGGTATCCCTGC
TCAAGCTGTTCGAACTGGGCAAGATGATACTGAAAATCGTGATCCTCGGCCTGACCTTTACCTATTTTATCCGTAGCTAT
GCCGAATCATTTGCCCAGTTGGTGCGCGCCGATGCCGAGGCCGGTCTATGGGTAACCAGCAAAATGATCCTCTGGTTGTG
GGGGATCTTGCTGCTGCTGACGGCGCTGTTTGCCGTCGTCGACTACAGCATGCAGTACCGCCATCTGCGTAAGCAGCTGA
TGATGTCGCGTGAGGATATTAAGCAGGAGTTTAAAAACTCGGAGGGGAGCCCGGAGATCAAGCAGCGACGCAGGGAGCTG
CACCGGGAGATCCAGAGCGGCAGTCTGGCTGATAGCGTTGCCAGCGCTTCGGTGGTGGTGCGTAACCCTACCCATATTGC
CGTCTGCCTGCGCTATTGCGAGGGGGAGACGCCGCTGCCGCAGGTGGTGGAGTATGGGCGCGGGGCGCGGGCGCAGCATA
TCGTGACGCTGGCGGAGGCGCTGCGCATTCCCGTGGTGGAAAATATTCCGCTGGCGCGCGCGCTGATTGCGACCACCCGT
CCGGGCGATTACGTTCCCGAAGAGCTGTTTGCCGCGGTAGCTCAGCTCCTGCGTCTGCTGCGCGACGATACACAGGAGGA
GGAGAATGATGAGTAA

Protein sequence : 
MSEKTEQPTDKRLRDAREEGQVAKSQDIGATVQLAVILLWMVTEGPRMYAAIGGFIDATLATVNLPLLDAMTLLTGEAAT
LMIRFVFGLAMLLIVTLILTGLVETGFLFAPKAIMPSAERISPLSNAKQMVSLLKLFELGKMILKIVILGLTFTYFIRSY
AESFAQLVRADAEAGLWVTSKMILWLWGILLLLTALFAVVDYSMQYRHLRKQLMMSREDIKQEFKNSEGSPEIKQRRREL
HREIQSGSLADSVASASVVVRNPTHIAVCLRYCEGETPLPQVVEYGRGARAQHIVTLAEALRIPVVENIPLARALIATTR
PGDYVPEELFAAVAQLLRLLRDDTQEEENDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaU YP_216430.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 7e-43 45
ssaU NP_460387.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 2e-44 45
ssaU CAA68202.1 secretion system apparatus, SsaU Virulence SPI-2 Protein 1e-44 45
ssaU NP_456106.1 putative type III secretion protein Virulence SPI-2 Protein 2e-44 45
ssaU NP_805093.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 2e-44 45
YPO0273 YP_002345355.1 secretion system apparatus protein SsaU Virulence Not named Protein 1e-49 44
escU AAC38372.1 EscU Virulence LEE Protein 3e-48 41
ECs4580 NP_312607.1 secretion system apparatus protein SsaU Virulence LEE Protein 5e-48 41
escU CAC81850.1 EscU protein Virulence LEE II Protein 3e-48 41
escU YP_003236100.1 T3SS structure protein EscU Virulence LEE Protein 5e-48 41
escU AAK26703.1 EscU Virulence LEE Protein 7e-49 41
escU YP_003232141.1 secretion system apparatus protein SsaU Virulence LEE Protein 4e-48 41
escU AAL57530.1 EscU Virulence LEE Protein 7e-49 41
escU YP_003223487.1 T3SS structure protein EscU Virulence LEE Protein 9e-49 41
escU CAI43886.1 EscU protein Virulence LEE Protein 7e-49 41
escU AAC31525.1 L0046 Virulence LEE Protein 4e-48 41
escU ACU09470.1 secretion system apparatus protein SsaU Virulence LEE Protein 4e-48 41
escU NP_290280.1 secretion system apparatus protein SsaU Virulence LEE Protein 5e-48 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT01EI_0963 YP_002932411.1 type III secretion protein, YscU/HrpY family VFG0522 Protein 7e-45 45
NT01EI_0963 YP_002932411.1 type III secretion protein, YscU/HrpY family VFG0824 Protein 2e-48 41
NT01EI_0963 YP_002932411.1 type III secretion protein, YscU/HrpY family VFG0718 Protein 2e-48 41