Gene Information

Name : NT01EI_0960 (NT01EI_0960)
Accession : YP_002932408.1
Strain : Edwardsiella ictaluri 93-146
Genome accession: NC_012779
Putative virulence/resistance : Virulence
Product : type III secretion apparatus protein, YscR/HrcR family, putative
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 948941 - 949588 bp
Length : 648 bp
Strand : +
Note : -

DNA sequence : 
ATGTCTCTGACAGAACAACCGGCCGAATTAATCGCGCTCCTGGTGACTCTCTCGCTGCTGCCGCTGCTGATCGTAATGGG
TACATCGTTTTTAAAGCTGTCTGTGGTGTTTGCCCTGCTGCGTAATGCGCTGGGAATACAGCAGATCCCCCCGAATCTTG
CGCTTTACGGGCTGGCGCTGATCCTGACGCTGTTTATTATGACGCCGGTCGGTACCGCCGTGCAGGCGCGGTTGGCCGAT
GCGCCTGCACAGGCACAGACAACGCTGCTGTCGCGGTTATCTGACAATACGCTCGACCCATATCGCCAGTTTCTGCGTCA
GCATACTTCCGCAAAGCAGCTGAAATTTTTTCGCCAGGTGGCCACCAAGAGCTGGCCCGCCTCCGTCCGGGAGAAGATCA
GCGATAACTCGCTGCTGTTATTGATGCCGGCGTTTGCCGTCAGTCAGCTGGTGGAGGCATTTCAGATAGGCCTGCTGCTG
TTTTTGCCCTTTATCGCCATCGATCTCATCGTATCCAATATCCTGCTGGCGATGGGGATGATGATGGTGTCGCCGATGAC
GATCTCCATGCCGTTCAAGCTGCTGGTTTTTATTTTGGTCGGGGGCTGGGACAAGATACTGGGCCAGCTGCTGCTTTCGT
ACCGCTAA

Protein sequence : 
MSLTEQPAELIALLVTLSLLPLLIVMGTSFLKLSVVFALLRNALGIQQIPPNLALYGLALILTLFIMTPVGTAVQARLAD
APAQAQTTLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQVATKSWPASVREKISDNSLLLLMPAFAVSQLVEAFQIGLLL
FLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGGWDKILGQLLLSYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-54 64
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 6e-50 59
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 6e-50 59
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-50 59
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 9e-50 58
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 9e-50 58
lscR AAO18040.1 LscR Virulence TTSS locus Protein 9e-48 55
escR AAL57527.1 EscR Virulence LEE Protein 1e-41 51
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-41 51
escR CAC81847.1 EscR protein Virulence LEE II Protein 1e-41 51
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-41 51
escR CAI43889.1 EscR protein Virulence LEE Protein 1e-41 51
escR AAC31528.1 L0049 Virulence LEE Protein 1e-41 51
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-41 51
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-41 51
escR AAK26700.1 EscR Virulence LEE Protein 1e-41 51
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-41 51
escR AAC38369.1 EscR Virulence LEE Protein 1e-40 50
unnamed AAL06354.1 EscR Virulence LEE Protein 8e-42 50
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-41 50
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 8e-41 50
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-41 50
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-34 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-34 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-34 45
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 7e-31 44
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 6e-36 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 5e-36 44
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 6e-31 44
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 8e-33 44
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-29 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-29 44
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 9e-36 44
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 6e-36 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 9e-36 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 9e-36 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 9e-36 44
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 5e-36 44
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-28 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-28 43
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 2e-35 43
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 3e-23 41
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 3e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT01EI_0960 YP_002932408.1 type III secretion apparatus protein, YscR/HrcR family, putative VFG0519 Protein 2e-50 59
NT01EI_0960 YP_002932408.1 type III secretion apparatus protein, YscR/HrcR family, putative VFG0188 Protein 4e-47 54
NT01EI_0960 YP_002932408.1 type III secretion apparatus protein, YscR/HrcR family, putative VFG0394 Protein 2e-46 54
NT01EI_0960 YP_002932408.1 type III secretion apparatus protein, YscR/HrcR family, putative VFG0044 Protein 7e-40 52
NT01EI_0960 YP_002932408.1 type III secretion apparatus protein, YscR/HrcR family, putative VFG0827 Protein 6e-42 51
NT01EI_0960 YP_002932408.1 type III secretion apparatus protein, YscR/HrcR family, putative VFG0715 Protein 5e-41 50
NT01EI_0960 YP_002932408.1 type III secretion apparatus protein, YscR/HrcR family, putative VFG1012 Protein 8e-32 42
NT01EI_0960 YP_002932408.1 type III secretion apparatus protein, YscR/HrcR family, putative VFG0551 Protein 1e-23 41
NT01EI_0960 YP_002932408.1 type III secretion apparatus protein, YscR/HrcR family, putative VFG2338 Protein 2e-24 41