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Name : NT01EI_0958 (NT01EI_0958) Accession : YP_002932406.1 Strain : Edwardsiella ictaluri 93-146 Genome accession: NC_012779 Putative virulence/resistance : Virulence Product : type III secretion protein, HrcV family Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 946340 - 948397 bp Length : 2058 bp Strand : - Note : - DNA sequence : ATGAAAACGGTCAATAGCTGGCTACACAAAATCACTGCGCGCCAGGATATCATTCTGGCGGCCATGCTATTACTGGCCGT TTTCATGATGATCATTCCCCTGCCGACGCCCCTGATCGACATCCTGATCGCCATCAACCTCACGCTGTCGATCACCCTGC TGATGATGGCGGTCTACATCCGTGAACCCATGGAGTTCTCCGCCTTTCCCTCCGTTTTGCTCATCACGACGCTGTACCGT CTGGCGCTGACCATCAGCACCAGCCGCCTTATTCTGCTGCAGCACGATGCCGGCGAGATCGTCTATACGTTTGGCAACTT TGCCGTGGGGGGCAATCTGGCCGTCGGTCTCATCGTGTTCGCCATCATTACCGTCGTGCAGTTTATCGTGATAACCAAGG GCTCTGAACGCGTGGCTGAAGTCAGCGCCCGCTTCTCCCTCGACGCGATGCCGGGCAAACAGATGAGTATCGACGGTGAC ATGCGTGCCGGGATCATTGATGCGACAGAAGCCCGTCGCCAGCGGGCCCTGGTTCAAAAAGAGAGCCAGCTCTATGGCGC GATGGATGGCGCGATGAAGTTTGTCAAAGGGGATGCCATCGCCTCGATCATCGTCATACTGGTCAATATTGTCGGGGGGA TCTGCGTCGGCGTATTTATGCATGAGATGAGCGCGGGCGATGCAGCGGCAACCTACGCCATTCTGTCCGTCGGCGATGGC CTGATAGCCCAGATCCCGGCGCTGCTCATTTCGATCGCCGCCGGGATCATCGTCACCCGGGTTCCTGGCGAAAACCGGCG TAACCTTGCCAGTGAGCTCACCGAACAGATCCTGCGCCAGCGCCAGGCGCTGTGGATCGTTGCCGCCGTGCTGGCCCTGT TTGCCGCACTGCCCGGCTTTCCTACCCTGATCTTTCTCAGTCTTGGCGCGGGACTGGCCGCTATCGCTTACTCGCTGAGG CGCAAAGAACAGCAACACTCCCCGCATACCGCCAGCCACAGCGCAGCCTCGCGCGACGAGAGTGGGCAGGAGGGCGCACC ACTGCTTATAGGCGCAACACCGCTCGCACTGCGCCTGCCCGACGCGCTGGCCCGCGATCCCTCCCTCACCCAGGCGCTGG CCACACTGCGGGCAGAAAAGCTGGAGCAGGCGGGGCTGCCGTTACCGGAGATTCAGATCCAGACAGATAATGGCTTTGGC CCGGATCAGTTTGCCCTGTTGCTGTATCAGGAGCCGGTGCTCGCAATAACTCTTCCCCACCTTGCCCTGCTCGATATTAC TGCGCCGCCGCTGCGCCAGGCTGACCACCGGGAGACGCTCCCCTTTGGCGGGATCACGCTACAGTGGCTCTCGCTGGAAC AGGCCGAAAGCAGCGCCACCATCGGTGTAAACAGCTATCAGGGCAATGCCCGGATTGCCTATCTCGTCTCTCTGGCGCTG GATCGCTATGGTGCCGAGTTTATCGGCGTCCAGGAGGCCCGTTACCTGATGGATCAGATGGAGCAGCGCTACGGCGAGCT GGTCAAAGAGCTGCAGCGTCAGCTGCCGGTCGCACGGATAGCTGATGTTCTGCAGCGTCTGGTCGCGGAGAGCGTCTCCA TCCGCGATCTGCGATCCATCTTTGAGGCGCTGGTCGAGTGGGCGCCGCGGGAAAAGGATCCCGTGATGCTGGCCGAGTAT GCCCGGCTGGCCCTGCGCCGCCACATTGTCGGACGCCAGCGCCACGGTCAGCCCTGGGTCAAGGCCTGGCTTATCGGCAG CCATATTGAGCAGATGATGCGTGAGTCTATCCGCCAGACCTCTGCAGGATCCTACTCCGCGCTCTCTCCACAGGAGAATC AGGCGATTCTGGCCGAGATCCACGCGGCGCTGGAGCGCAGCGGCGGCGCCAATACGGCCATCGTGACCGCGATCGATATC CGTCGATTTATCCGCAAACTGATCGAACGTGAGCTGTTCACCACACCCGTACTCTCGTTTCAGGAGCTGGACGATGAGGC AGAGCTCAAGGTATTAGGACACATTGAACTGATAGGAGACACCCATGCGGCTGCCTGA Protein sequence : MKTVNSWLHKITARQDIILAAMLLLAVFMMIIPLPTPLIDILIAINLTLSITLLMMAVYIREPMEFSAFPSVLLITTLYR LALTISTSRLILLQHDAGEIVYTFGNFAVGGNLAVGLIVFAIITVVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGD MRAGIIDATEARRQRALVQKESQLYGAMDGAMKFVKGDAIASIIVILVNIVGGICVGVFMHEMSAGDAAATYAILSVGDG LIAQIPALLISIAAGIIVTRVPGENRRNLASELTEQILRQRQALWIVAAVLALFAALPGFPTLIFLSLGAGLAAIAYSLR RKEQQHSPHTASHSAASRDESGQEGAPLLIGATPLALRLPDALARDPSLTQALATLRAEKLEQAGLPLPEIQIQTDNGFG PDQFALLLYQEPVLAITLPHLALLDITAPPLRQADHRETLPFGGITLQWLSLEQAESSATIGVNSYQGNARIAYLVSLAL DRYGAEFIGVQEARYLMDQMEQRYGELVKELQRQLPVARIADVLQRLVAESVSIRDLRSIFEALVEWAPREKDPVMLAEY ARLALRRHIVGRQRHGQPWVKAWLIGSHIEQMMRESIRQTSAGSYSALSPQENQAILAEIHAALERSGGANTAIVTAIDI RRFIRKLIERELFTTPVLSFQELDDEAELKVLGHIELIGDTHAAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 2e-152 | 57 |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 5e-136 | 52 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 5e-136 | 52 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 3e-136 | 52 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 3e-136 | 51 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 4e-136 | 51 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 2e-130 | 48 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 3e-130 | 48 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 2e-130 | 48 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 3e-130 | 48 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 2e-130 | 48 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 2e-130 | 48 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 4e-129 | 48 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 4e-129 | 48 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 3e-128 | 47 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 1e-129 | 47 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 1e-130 | 47 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 4e-130 | 47 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 4e-130 | 47 |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 5e-130 | 47 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 5e-130 | 47 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-119 | 46 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 5e-95 | 41 |
| ysaV | AAS66840.1 | YsaV | Not tested | SSR-1 | Protein | 1e-96 | 41 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 3e-95 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| NT01EI_0958 | YP_002932406.1 | type III secretion protein, HrcV family | VFG0514 | Protein | 2e-136 | 51 |
| NT01EI_0958 | YP_002932406.1 | type III secretion protein, HrcV family | VFG0813 | Protein | 2e-130 | 47 |
| NT01EI_0958 | YP_002932406.1 | type III secretion protein, HrcV family | VFG0729 | Protein | 6e-131 | 47 |
| NT01EI_0958 | YP_002932406.1 | type III secretion protein, HrcV family | VFG0064 | Protein | 2e-126 | 46 |
| NT01EI_0958 | YP_002932406.1 | type III secretion protein, HrcV family | VFG0384 | Protein | 2e-124 | 45 |
| NT01EI_0958 | YP_002932406.1 | type III secretion protein, HrcV family | VFG0198 | Protein | 9e-111 | 45 |
