Gene Information

Name : NT01EI_0936 (NT01EI_0936)
Accession : YP_002932384.1
Strain : Edwardsiella ictaluri 93-146
Genome accession: NC_012779
Putative virulence/resistance : Virulence
Product : type III secretion apparatus lipoprotein, YscJ/HrcJ family, putative
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 931833 - 932564 bp
Length : 732 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAATCACTCCATGGATACTGCTATTCAGCATGCTGCCCCTGTTGAGTGGATGTAAAAGCGAGCTCTACAGCAAGCT
GGATGAGAAAGAGGCTAATCAGATGATGGCCCTGCTGATCTACAACAAAATTCCGGCCGATAAGCGGATGGAAAAAGATG
GGGTGACCCTATTGGTCGATCAGGATCGCTTTGTCGATGCCGTCGAGGTACTCCGCCAAAACGGCCTGCCGCGCCCTCAA
ACCGTCACCATGCAGGAGTTATTTCCCAGCGGACAGCTGGTTACCTCCCCAGAACAGGAGGAAGCCAAACTTAACTATCT
TAAAAGCCAGCAAATTGAAAAGATGCTTAGTAGCATGGATGGCGTCATTAATGCCGAAGTCTCGGTAGCTGAACCGCGCG
CCATCGTAGGCGAGGCGCCGCCCCTGGCCTCCGCGGCGGTATTCATTAAATACAGTCCCGACGTCAATCTCCCCGCCAGA
GAGGCAGAGATCAGGGCCCTCATCAACAATGGTATTCCCGGGCTCGCGCCGGATCGCATCAGTGTGACCCTACAGCGGGC
CGAATACCGTTATCAACCCCCGGGTGCCGTCGCAGCAGAGGATCATAAAATCATTCTATATGGATACCCGCTGCCTTTGG
AGGCGCTGATCGCCGCGGCCTGTACCCTCCTGTTTGGCCTGCTCATTAGCCTGACCCTATGGCTACGCCGCCCCAGGAGG
AGCACGCCATGA

Protein sequence : 
MKITPWILLFSMLPLLSGCKSELYSKLDEKEANQMMALLIYNKIPADKRMEKDGVTLLVDQDRFVDAVEVLRQNGLPRPQ
TVTMQELFPSGQLVTSPEQEEAKLNYLKSQQIEKMLSSMDGVINAEVSVAEPRAIVGEAPPLASAAVFIKYSPDVNLPAR
EAEIRALINNGIPGLAPDRISVTLQRAEYRYQPPGAVAAEDHKIILYGYPLPLEALIAAACTLLFGLLISLTLWLRRPRR
STP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0263 YP_002345344.1 type III secretion system apparatus lipoprotein Virulence Not named Protein 9e-46 54
ssaJ CAA12196.1 SsaJ Virulence SPI-2 Protein 4e-39 49
ssaJ YP_216417.1 secretion system apparatus protein SsaJ Virulence SPI-2 Protein 1e-38 49
ssaJ CAA70532.1 secretion system apparatus Virulence SPI-2 Protein 1e-38 49
ssaJ NP_460374.1 needle complex inner membrane lipoprotein Virulence SPI-2 Protein 1e-38 49
ssaJ NP_456119.1 putative pathogenicity island lipoprotein Virulence SPI-2 Protein 1e-38 49
ssaJ NP_805080.1 pathogenicity island lipoprotein Virulence SPI-2 Protein 1e-38 49
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 3e-30 44
escJ AFO66410.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-34 43
escJ AFO66320.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-34 43
unnamed AAL06364.1 EscJ Virulence LEE Protein 1e-29 41
escJ AAC38379.1 EscJ Virulence LEE Protein 2e-30 41
escJ AAC31518.1 L0039 Virulence LEE Protein 2e-30 41
escJ ACU09463.1 EscJ protein Virulence LEE Protein 2e-30 41
escJ YP_003236093.1 T3SS structure protein EscJ Virulence LEE Protein 3e-30 41
escJ NP_290273.1 hypothetical protein Virulence LEE Protein 3e-30 41
ECs4573 NP_312600.1 EscJ Virulence LEE Protein 3e-30 41
escJ YP_003232148.1 T3SS structure protein EscJ Virulence LEE Protein 7e-31 41
escJ AAK26710.1 EscJ Virulence LEE Protein 5e-31 41
escJ AAL57537.1 EscJ Virulence LEE Protein 5e-31 41
escJ CAC81857.1 EscJ protein Virulence LEE II Protein 5e-31 41
escJ CAI43879.1 EscJ protein Virulence LEE Protein 5e-31 41
escJ YP_003223480.1 T3SS structure protein EscJ Virulence LEE Protein 7e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT01EI_0936 YP_002932384.1 type III secretion apparatus lipoprotein, YscJ/HrcJ family, putative VFG0510 Protein 6e-39 49
NT01EI_0936 YP_002932384.1 type III secretion apparatus lipoprotein, YscJ/HrcJ family, putative VFG0817 Protein 1e-30 41
NT01EI_0936 YP_002932384.1 type III secretion apparatus lipoprotein, YscJ/HrcJ family, putative VFG0725 Protein 1e-30 41
NT01EI_0936 YP_002932384.1 type III secretion apparatus lipoprotein, YscJ/HrcJ family, putative VFG0409 Protein 2e-29 41