Gene Information

Name : NT01EI_2620 (NT01EI_2620)
Accession : YP_002934023.1
Strain : Edwardsiella ictaluri 93-146
Genome accession: NC_012779
Putative virulence/resistance : Resistance
Product : transcriptional regulator, AraC family
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 2507313 - 2507666 bp
Length : 354 bp
Strand : +
Note : -

DNA sequence : 
ATGTACAATACCGATTTTATCAGCGCACTACGCACCTGGATCGACAGCAACGTTGCCGCCATCTCATCCCTTGACGACGT
GGCGGCGCGCGCCGGTTACTCCAAATGGCACCTGCAGCGCATGTTTAAAGCACACACCGGAGTTCGGTTGGGGGAGTATA
TCCGCAATAAAAAGCTGGATGAGTCAGCCCGTCGGCTAAAAGTCTGCCAGGGATCGATTCTCGACATTGCCCTGTCGATG
GGCTTTGACTCCCAACGCTCCTTCACCCGCTCTTTCAAGCGGCGCTTTGACGTGACACCGGGCGTATGGAAGAAAGAGAT
GACAGCGGGGAACCCCTTGGATCGCGCCGCCTGA

Protein sequence : 
MYNTDFISALRTWIDSNVAAISSLDDVAARAGYSKWHLQRMFKAHTGVRLGEYIRNKKLDESARRLKVCQGSILDIALSM
GFDSQRSFTRSFKRRFDVTPGVWKKEMTAGNPLDRAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 2e-19 46
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 2e-19 46
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 2e-18 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family CP001138.1.gene1637. Protein 4e-21 50
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family CP000647.1.gene1624. Protein 9e-22 47
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family CP001918.1.gene2033. Protein 2e-21 47
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family BAC0560 Protein 3e-21 46
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family NC_002695.1.917339.p Protein 3e-21 46
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family CP000034.1.gene1596. Protein 3e-21 46
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family NC_010558.1.6276025. Protein 8e-20 46
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family CP001138.1.gene612.p Protein 2e-20 44
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family CP001138.1.gene4488. Protein 5e-19 44
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family BAC0371 Protein 4e-19 43
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family NC_002695.1.914293.p Protein 4e-19 43
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family CP000647.1.gene4499. Protein 9e-20 42
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family CP000034.1.gene4505. Protein 1e-18 42
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family CP001918.1.gene327.p Protein 1e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family VFG1038 Protein 7e-20 46
NT01EI_2620 YP_002934023.1 transcriptional regulator, AraC family VFG0585 Protein 4e-19 44