Gene Information

Name : HDEF_p0007 (HDEF_p0007)
Accession : YP_002925033.1
Strain :
Genome accession: NC_012752
Putative virulence/resistance : Virulence
Product : putative resolvase HDEF_p0007
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1961
EC number : -
Position : 6732 - 7292 bp
Length : 561 bp
Strand : +
Note : COG1961

DNA sequence :
ATGACGGGACAACGTATTGGCTATATTCGGGTCAGTACTTTTGACCAAAATTCAGAGCGGCAGCTCGAAGGCATCACAGT
CGATCGCATTTTTACCGACAAAGCCTCGGGCAAGGATATCAAACGACCGGAACTGGAGGCATTGCTGAGTTTCGTCCGTA
GTGGCGATACCGTGTTGGTGCATAGCATGGATCGTCTGGCCCGTAATCTTGATGATTTACACCGCCTCGTTCAACTGTTG
ACGCAACGCGGCGTCCGCATTGAGTTCTGCAAGGAACATCTGAGCTTTACCGGCGAAGACTCACCCATGGCCAATCTGAT
GTTATCTGTCATGGGCGCATTTGCTGAATTTGAGCGCTCCCTGATCAAAGAACGCCAGCGCGAAGGCATCGCATTAGCCA
AACAGCGGGGCGCTTATCGTGGCCGCAAAAAATCACTCTCGGAGAGTGAAATGACCGAACTATATCGCCGCGTTGTTGCC
GGCGACAAAAAAGCCCAGGTAGCACGCGACTTGGGTATCAGTCGGGAAACATTATATCAATATTTGAAGAGAGGAGAGTA
G

Protein sequence :
MTGQRIGYIRVSTFDQNSERQLEGITVDRIFTDKASGKDIKRPELEALLSFVRSGDTVLVHSMDRLARNLDDLHRLVQLL
TQRGVRIEFCKEHLSFTGEDSPMANLMLSVMGAFAEFERSLIKERQREGIALAKQRGAYRGRKKSLSESEMTELYRRVVA
GDKKAQVARDLGISRETLYQYLKRGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpR AFV53121.1 Tn21 resolvase Not tested AbGRI2-1 Protein 8e-70 81
tnpR YP_006098373.1 transposon Tn21 resolvase Not tested Tn2411 Protein 1e-69 81
tnpR AAL08439.1 resolvase TnpR Not tested SRL Protein 8e-70 81
tnpR ACF06154.1 resolvase Not tested Tn5036-like Protein 6e-67 80
tnpR ACY75537.1 TnpR Not tested Tn6060 Protein 2e-66 76
res YP_005124341.1 DNA-invertase Not tested Not named Protein 2e-27 49
res AGF35059.1 resolvase Not tested SGI1 Protein 9e-21 41
res AGK06929.1 resolvase Not tested SGI1 Protein 9e-21 41
res AGK06966.1 resolvase Not tested SGI1 Protein 9e-21 41
res AGK07012.1 resolvase Not tested SGI1 Protein 9e-21 41
res AGK07070.1 resolvase Not tested SGI1 Protein 9e-21 41
res AAK02044.1 resolvase Not tested SGI1 Protein 9e-21 41
tnpR ACD85600.1 TnpR resolvase Not tested SGI2 Protein 9e-21 41
res AGF34985.1 resolvase Not tested SGI1 Protein 9e-21 41
res AGF35025.1 resolvase Not tested SGI1 Protein 9e-21 41
resX ADZ05759.1 invertase/resolvase Not tested AbaR10 Protein 1e-14 41
1_365 CAJ77091.1 Resolvase N-term Not tested AbaR1 Protein 3e-16 41
resX ADZ05753.1 invertase/resolvase Not tested AbaR10 Protein 3e-16 41
resX ADZ05809.1 invertase/resolvase Not tested AbaR20 Protein 3e-16 41
resX AGK36651.1 partial invertase/resolvase Not tested AbaR26 Protein 3e-16 41
ACICU_00231 YP_001844890.1 site-specific recombinase, DNA invertase Pin protein Not tested AbaR20 Protein 5e-16 41
resX ACN81037.1 partial invertase/resolvase Not tested AbaR5 Protein 5e-16 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HDEF_p0007 YP_002925033.1 putative resolvase HDEF_p0007 VFG1030 Protein 3e-70 81