Gene Information

Name : HDEF_0926 (HDEF_0926)
Accession : YP_002923784.1
Strain : Candidatus Hamiltonella defensa T5A
Genome accession: NC_012751
Putative virulence/resistance : Unknown
Product : ISHde4 transposase, orfA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 930397 - 930654 bp
Length : 258 bp
Strand : -
Note : COG2963

DNA sequence : 
GTGACAAAACAAGGATATAGGGGGATAGAAGGAGCAAAAGCCATGGGCGTGAGTATCATCGCCCTCCGTGATGGGGTGAG
GCGGTCAATGAGCGAAAAAAGTGGACAAACTATTTCCCAAGGTAAAACAATGACAGCAGACCAACAACGGATTCAAGAGC
TGGAAGCCAAACTCCGCAAGGTTGAACGGGAGAAAGATATCCTCAAAAAGGCTTCATCTCTCTTAATGTCAGAGTTCCTG
AACACTTCCCGTGAGTAG

Protein sequence : 
MTKQGYRGIEGAKAMGVSIIALRDGVRRSMSEKSGQTISQGKTMTADQQRIQELEAKLRKVEREKDILKKASSLLMSEFL
NTSRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
RS05 AAP82950.1 putative transposase Not tested PAPI-2 Protein 7e-13 47
aec66 AAW51749.1 Aec66 Not tested AGI-3 Protein 4e-09 42
ECO111_3778 YP_003236113.1 putative IS602 transposase OrfA Not tested LEE Protein 6e-09 42
orfA AGK06994.1 IS1359 transposase; OrfA Not tested SGI1 Protein 6e-08 42
VC1790 NP_231425.1 transposase OrfAB subunit A Not tested VPI-2 Protein 8e-08 42
orfA AGK07052.1 IS1359 transposase; OrfA Not tested SGI1 Protein 6e-08 42
orfA YP_001217330.1 transposase OrfAB subunit A Not tested VPI-2 Protein 8e-08 42
orfA ACX47959.1 IS1359 transposase; OrfA Not tested SGI1 Protein 6e-08 42
VPI2_0009c ACA01826.1 transposase OrfAB subunit A Not tested VPI-2 Protein 6e-08 42
orfA AGK06911.1 IS1359 transposase; OrfA Not tested SGI1 Protein 6e-08 42
unnamed AGK06948.1 IS1359 transposase; OrfA Not tested SGI1 Protein 6e-08 42
unnamed CAD42034.1 hypothetical protein Not tested PAI II 536 Protein 9e-08 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HDEF_0926 YP_002923784.1 ISHde4 transposase, orfA VFG1123 Protein 2e-08 42
HDEF_0926 YP_002923784.1 ISHde4 transposase, orfA VFG1553 Protein 4e-08 41