|
Name : lysS (HDEF_0009) Accession : YP_002922936.1 Strain : Candidatus Hamiltonella defensa T5A Genome accession: NC_012751 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 6813 - 8327 bp Length : 1515 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTGAAGAAAAAATATCTATTACAGAGCGAAAAGAACTTAATCATGAGTTACAAACTCGTCGAGAAAAATTGGCGTT ATTACGAAAAAAAAGCTTTGCCTTCCCAAATGACTTTCGTCAGAAACATTTTTCTGGTGATTTGCATACTGAATATGATC ATAAAGAAAACGAAGAACTTATCGCTTTAAATAAGGAAGTGATTCTTGCTGGGCGTATGATGACAAGACGTATCATGGGT AAAGCCTCTTTTTTTACTCTTCAAGATACAAAAGGCCGAATTCAACTTTACGTTTCTCGCGATGATTTACCAGAAGGCAT TTATAACGAAGATTTCAAAAAATGGGATTTAGGCGATATTTTAGGGGTGCGAGGTCGATTGTTTAAAACAAAAACAGGAG AGCTTTCTGTTCATTGCACCGAATTGCGTTTACTCACGAAAGCATTGCGCCCACTGCCAGATAAATTTCACGGGCTTCTA GATCAAGAGGCACGATACCGTCAACGTTACTTAGATTTGATCGTCAACGAAAAATCTCGAAAAAACTTTATCTTACGTTC AAAAACAATTTCAATGCTACGCCAGTTTATGATGGGCAAAGGGTTTATGGAAGTGGAAACTCCTATGATGCAATCTATCC CAGGAGGAGCTGCAGCTCGCCCATTTTTAACGCACCATAATGCGCTGAATATCGATATGTACTTGAGAATAGCGCCTGAA TTGTATTTAAAACGTTTGGTGGTCGGGGGATTTGATCGCATATTTGAAATCAATCGTAATTTTCGTAATGAAGGTATTTC ATTACGCCACAATCCTGAATTTACCATGATGGAGCTTTACATGGCGTATGCGGATCACCAGGATTTGATTGAGTTAACAG AGGAACTTTTTCGTGAGTTAACCCTAAACGTATTAGGAACGCATGTAGTAAAATATGGCGAACATATTTTTGATTTTAGT CAACCTTTTCAAAAATGGACAATGAAAGAAGCCATTCAAAAATATCGACCTGAAATTAATATTAACGATTTAGAAGATAA AAATAAGGCGATACTGATTGCAGAATCTCTAGATGTTCGTGTAGAAAAATTTTGGGAATTAGGGCGAATTCAATGTGAAA TTTTTGAAGAAACGGCAGAAAAACATCTTATTCAACCTACTTTTATTACTGAATATCCAGCAGAAGTTTCACCATTAGCG CGTCGAAATGATCATAATTCTTTTATTGCGGATCGATTTGAATTTTTTATTGCAGGTAAAGAAATTGGCAATGGTTTTTC TGAATTGAATGATGCTGAAGATCAAGCTCAACGTTTTACCGAACAATTAAACTCAAAAGAAAAAGGCGATCATGAAGCGA TGTCTTATGATCAAGATTATATTATTGCACTAGAACACGGATTACCTCCGACCGCAGGTTTAGGAATAGGTATTGATCGT ATGATTATGCTATTGACTAATAGTATAAATATCCGTGATGTTATTCTATTTCCAACAATGCGCCCATTAAAATAA Protein sequence : MSEEKISITERKELNHELQTRREKLALLRKKSFAFPNDFRQKHFSGDLHTEYDHKENEELIALNKEVILAGRMMTRRIMG KASFFTLQDTKGRIQLYVSRDDLPEGIYNEDFKKWDLGDILGVRGRLFKTKTGELSVHCTELRLLTKALRPLPDKFHGLL DQEARYRQRYLDLIVNEKSRKNFILRSKTISMLRQFMMGKGFMEVETPMMQSIPGGAAARPFLTHHNALNIDMYLRIAPE LYLKRLVVGGFDRIFEINRNFRNEGISLRHNPEFTMMELYMAYADHQDLIELTEELFRELTLNVLGTHVVKYGEHIFDFS QPFQKWTMKEAIQKYRPEININDLEDKNKAILIAESLDVRVEKFWELGRIQCEIFEETAEKHLIQPTFITEYPAEVSPLA RRNDHNSFIADRFEFFIAGKEIGNGFSELNDAEDQAQRFTEQLNSKEKGDHEAMSYDQDYIIALEHGLPPTAGLGIGIDR MIMLLTNSINIRDVILFPTMRPLK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-153 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002922936.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-153 | 64 |
