|
Name : HDEF_0268 (HDEF_0268) Accession : YP_002923181.1 Strain : Candidatus Hamiltonella defensa T5A Genome accession: NC_012751 Putative virulence/resistance : Virulence Product : ABC transporter Function : - COG functional category : V : Defense mechanisms COG ID : COG2274 EC number : - Position : 266658 - 268721 bp Length : 2064 bp Strand : - Note : COG2274 DNA sequence : ATGGGAAAAAAACCTGAGTCTTACTATCTCTCAGCAGAGGATGCTTTATCCCTTGTTGCTAAAAGCATTAATATTAAAAT TGATGTTGACAAAAATGAACTGGAGCGTCTATTTAAACAATATGATAGAAATAACATCAATGATACGGTAAAATTAAAAA ATTTTTTTTTATCATTAGGCCTCGTGCTACAGGAAGTCCATTTTAATGGCTCAGAAGATTTGCTTAATGAAGCTATGCCA ATCATTTTATTAACACCAGATATGGAATGGATGGCGTGCATAGGAGGTGGCAAAAAATTTAAATTGATTGAGGCTGGAGG GCAAATTTGTGAAGTGAGCTTATCAGCGGAAAGACTCGCGCTGATTTCGGCTTTCAGATTGCAACCATTACGAAAAGTGG TTGATGGCATTCGAGTGATTAACATATTAAGGCAGGCGCTATCGACCAACAAAATTTTTTACAGTAAATATTTTTTCTCA TCATTTTTTATGGCGCTGTTTGCCTTAACTATCCCTGTATTTAGTAATCTTTATTACGATAAACTGGTGCCCAGTGCCTC AACTGCATCATTGTTTGGGATTGTATTTATTGCGGCCTTATTTATTATTTTTGAATTTATTCTGAGATCGTCAAAAGATA TCTATCAATCCATTATTTCAAGAAAAGATGATGTGGATATTGATGTCTCATTTTTGGAAGCGGTTATTTACAATAAGAAA AAAGATGGGCGATCGATGTCTTCTGCCTTCGTTTTATGGCACGAATTTCAAAAAGTAAAGCAAGTATTACTCAATACCGT CTTTCAGCGCTTAGCGGACATTCCTTTATTAATTATCTTTATTTTAGTGATTTATCTGAATGTAGGATGGGTGGTTTTTA TCCCCATTTTTATGTTTTTATTTTCGATATTAATCGCATTCATTCATCATCACTACACATATTCATTAATAGAAAAGCAA AAAAAAGTGCAAAAAAATAGAAATGTTTTTATGACTGAAGTTTTTTATTCTATTAAAATGATCCACACGTTAAATAATAA AAATTTATTATTAGATTGGGTAAACAGTTCTAATCAGCAATCTTATCTTAATTTAAAAATTCGCAAATTTACTCTCTTTT ATCAATCCATGCTAGCGAGCATATCTTCTGTTTCTCATATTAGTATTATGGTAATCGCTTTTTTTATGGTGATTAATGGT AGCGTTACCACTGGGGCAATTGTTTCCTCGGTGATTGTCTCAGGTAGAATATCTGGGATTATTTCTCACTTTTCATCAAT GGTGGTCTCTTTACTTTCTGCTGAAAAAACCGCTAAAGATTTAATCGCCTTTTTTGAGAATGATAAAAAAAACAAACCCA CGCTACAATCTATCAGCCACTGCAGTGGACAAATTTCTCTAATGGGAGTCAGTTATCAATATCATCCCCAGTCACCGGCG GTGATCAGCAATCTTTCCCTGGATATTCCAGCCGGCCAACGCGTAGTGATTCTGGGTGATTCTGGAGCAGGTAAAAGCTC ATTATTAACATTGTTATCTGGTTATATCTCACCTTCAGAAGGGGTTATTCTTTATGATGGATATAATCTGAGTCATCTAT CTCAATCTTTTTTTTCTCAACAATTGAGTGTGGTCACCGCCCATGATGTATTATTTACAGGGACAATAGAAAGTAACTTT GCTTTAAAAGCACATTCAGATCGCGAACGAATATTACAGGCGCTCGCTTTGACTAACTGTAATTTTATCTTGCAACATCC GATGGGCTTACGTTTTCCTGTCAATTTTATGGCTCGAAATCTCTCTTCTGGGCAGCAGCAGCAGCTGTTGATTGCACGTA GCCTGAGTAGTGATGCCAGTATCTTTTTGTGGGATGAGCCCACCTCAAATATTGACGAAAATACCGAGAAAAAGATTTTT GAAAATTTAGACACTTTTATGACGGCTAAAACATTATTAACGGTGACACACAGGCGCAATTTGATCAAATATTTCGATCG CGTATTGGTCATGCAAAATGGACAGATTACCCGTGATTGTTCACCAGAAAAATTGATGTTGTAA Protein sequence : MGKKPESYYLSAEDALSLVAKSINIKIDVDKNELERLFKQYDRNNINDTVKLKNFFLSLGLVLQEVHFNGSEDLLNEAMP IILLTPDMEWMACIGGGKKFKLIEAGGQICEVSLSAERLALISAFRLQPLRKVVDGIRVINILRQALSTNKIFYSKYFFS SFFMALFALTIPVFSNLYYDKLVPSASTASLFGIVFIAALFIIFEFILRSSKDIYQSIISRKDDVDIDVSFLEAVIYNKK KDGRSMSSAFVLWHEFQKVKQVLLNTVFQRLADIPLLIIFILVIYLNVGWVVFIPIFMFLFSILIAFIHHHYTYSLIEKQ KKVQKNRNVFMTEVFYSIKMIHTLNNKNLLLDWVNSSNQQSYLNLKIRKFTLFYQSMLASISSVSHISIMVIAFFMVING SVTTGAIVSSVIVSGRISGIISHFSSMVVSLLSAEKTAKDLIAFFENDKKNKPTLQSISHCSGQISLMGVSYQYHPQSPA VISNLSLDIPAGQRVVILGDSGAGKSSLLTLLSGYISPSEGVILYDGYNLSHLSQSFFSQQLSVVTAHDVLFTGTIESNF ALKAHSDRERILQALALTNCNFILQHPMGLRFPVNFMARNLSSGQQQQLLIARSLSSDASIFLWDEPTSNIDENTEKKIF ENLDTFMTAKTLLTVTHRRNLIKYFDRVLVMQNGQITRDCSPEKLML |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| spi4_R | AAC26655.1 | ltkB homolog | Virulence | SPI-4 | Protein | 5e-172 | 72 |
| STM4262 | NP_463127.1 | ABC-type bacteriocin/lantibiotic exporter | Not tested | SPI-4 | Protein | 0.0 | 70 |
| siiF | CAE11798.1 | putative type-I secretion protein (putative inner membrane component) | Virulence | SPI-4 | Protein | 0.0 | 70 |
| STY4460 | NP_458560.1 | putative type-1 secretion protein | Not tested | SPI-4 | Protein | 0.0 | 70 |
| SC4141 | YP_219128.1 | bacteriocin/lantibiotic ABC transporter | Not tested | SPI-4 | Protein | 0.0 | 70 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HDEF_0268 | YP_002923181.1 | ABC transporter | VFG0582 | Protein | 0.0 | 70 |
