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Name : gspD (HDEF_0241) Accession : YP_002923157.1 Strain : Candidatus Hamiltonella defensa T5A Genome accession: NC_012751 Putative virulence/resistance : Virulence Product : protein exporter, transport across outer membrane (General Secretory Pathway) Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 248635 - 250698 bp Length : 2064 bp Strand : - Note : COG1450 DNA sequence : ATGTTTTGGTCTGATATATTACGCCTTCACATTTTTCGACATAGAATTTTTTCTTTTGTAAAAAAGATAAATTATCCTTA TTTTTTCCCATTGATTTTATTATTATTTTTTTTGTTCTTTCCCTCCATCTTATTAGCCGATCATTTTTCGGCCAACTTTC AAGATACCGATTTGCGCGCTTTTATTGATACTGTTGGAGTTAACCTAAATAAAACGATGATCATGGGGCCTCATATTCAA GGTCGGGTGAGCATTAGAAGCACAGATACTTTATCGACAGAGCAATACTATCAACTTTTTCTCAATGTGTTAGAAGCACA AGGCTATGCCGCCATTCCAGTTGATGGCGGCGCGCTCAAAATTGTCAGAAGCATGCATGTTAAAACGGAGCCCATTCCTG TCATAACTCACCAAAAAAATCCTTATTTCGGTGACGAAATGATGACACAGGTGATGAGCCTTCAAAATATTTCAGCACGT GAATTGACACCTGTATTGCGTCAGCTGATAGATCGAGGGGAATCAGGAAATATCATCAGCCATGGTCCGTCGAATATTCT TATTCTCTCAGGAAGGGCGGCTGTTATTAAGCGTTTGTTTTCTATTATTGAGCTTATAGATTCGAATGCAGATAAATTCA ATGAAGTCATCCCATTAAAAAATGCGTCTGCAACGGAAATGGTTAGGGTCATCAATGCTTTAAATAAAAATGCCCCCCAA AATGATTTGTCTATATCAAAATACACAGTGGTAGCCGATAAACGGACTAACAGCGTTATTATCCATGCTGAACCTAAAAT GCGCCAAAAAATCAAAAAATTAATACAGGAACTGGATTCAGAAACTCAGCAAAGCGGCTACAGTCAGGTGTTTTACCTTA AATACAGTCAAGCCGAAGATTTAGTTGACATCATTGAAAAAGTGAGCAACACCTTAAAAGGGAAACAAAACGAGCAGGGT CAAGATCAAAATAGAATGTCTGTTTCGATTGCCGCCAGTAAAAAAACAAATGCGCTCGTGGTCACAGCATCTCAAGATGT GATGCAATCTATACGAAGCATCATTGAACAGTTGGATATACGTCGTGCTCAAGTACATGTTGAGGCACTGATTGTTGAAG TTGCAGAAATCAGTGATATTAATTTCGGAGTACAGTGGCAAGCGAACAACAGCTTGATTCAATTTAATAATGGCCATCAA ATTCCATTAGGAGCGTTAACTTTGGCCCGACGGCATGCGGAGTCAAAAACAGGGAATACCTTGAATCAAAACGAAACGTT CCTACCTTCCCAAGTGTCTAGTGATATCTCATTGCTGAGCAAACTGCTCTCGGGTTTCAGTGGTGCTAAGGTCGGTATTA TTAAAGGAGATTGGCAAGCACTGGTTCAAGCGGTGAAAAACGATTCCAGTGTGAATGTACTTTCCACTCCAAGTATTACC ACTTTAGATAATCAAGAAGCCTCGTTTATGGTAGGTGAAGATGTCCCTGTACTCACGGGCTCGGCGGCAAACGCGAATAA CACGAATCCCTTTAATACTGTCGAACGAAGAAAAATTGGTGTGATGTTAAAAGTCACCCCTCAAATCAACGAAGGGAACA CCGTACAGTTGCTGATAGAGCAAGAAGTATCAAAAATTCAGGGGGAAACCAAGCTTGATATCAAATTTGCGGAACGTAAA CTCAAAACCACTGTATTGGCTGATGATGGTCAATTAATTGTATTGGGGGGGCTTCTCGATGAAGAGAGCGGGGAAAGTGT ATCTAAAGTACCTGTACTAGGAGACATTCCGATCTTGGGGCATCTTTTTAAATCCACTGTTAATAAAAAAACAAAACGTA ATTTGATGATATTTATCCGCCCTACCATTTTACGAGATGGGCTCTCTGCTGACGGCATTTCACAACGAAAATATCATTAT ATGCGAGCTGAGCAACTGTATAAAAATCACCCAGGATTGAGTTTAATGCCCCGCACAAAGCAGCCACTGCTTCCTGCTGA TGGAAAAGAATCTGAATATCCAGCAGAAATTCGCGCTCTACTAGCTATAACTAAAAAATCATGA Protein sequence : MFWSDILRLHIFRHRIFSFVKKINYPYFFPLILLLFFLFFPSILLADHFSANFQDTDLRAFIDTVGVNLNKTMIMGPHIQ GRVSIRSTDTLSTEQYYQLFLNVLEAQGYAAIPVDGGALKIVRSMHVKTEPIPVITHQKNPYFGDEMMTQVMSLQNISAR ELTPVLRQLIDRGESGNIISHGPSNILILSGRAAVIKRLFSIIELIDSNADKFNEVIPLKNASATEMVRVINALNKNAPQ NDLSISKYTVVADKRTNSVIIHAEPKMRQKIKKLIQELDSETQQSGYSQVFYLKYSQAEDLVDIIEKVSNTLKGKQNEQG QDQNRMSVSIAASKKTNALVVTASQDVMQSIRSIIEQLDIRRAQVHVEALIVEVAEISDINFGVQWQANNSLIQFNNGHQ IPLGALTLARRHAESKTGNTLNQNETFLPSQVSSDISLLSKLLSGFSGAKVGIIKGDWQALVQAVKNDSSVNVLSTPSIT TLDNQEASFMVGEDVPVLTGSAANANNTNPFNTVERRKIGVMLKVTPQINEGNTVQLLIEQEVSKIQGETKLDIKFAERK LKTTVLADDGQLIVLGGLLDEESGESVSKVPVLGDIPILGHLFKSTVNKKTKRNLMIFIRPTILRDGLSADGISQRKYHY MRAEQLYKNHPGLSLMPRTKQPLLPADGKESEYPAEIRALLAITKKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 0.0 | 61 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 0.0 | 61 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspD | YP_002923157.1 | protein exporter, transport across outer membrane (General Secretory Pathway) | VFG2047 | Protein | 3e-180 | 60 |
