Gene Information

Name : ssaR (HDEF_2251)
Accession : YP_002924940.1
Strain : Candidatus Hamiltonella defensa T5A
Genome accession: NC_012751
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 2025367 - 2026017 bp
Length : 651 bp
Strand : -
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGGAATTAGTCAATAGCTCCTATGAATTAATTACTTTACTCTTTTTATTATCTATTTTTCCATTACTGGTCGTGATGGG
GACTTGCTTTTTAAAGTTGTCGGTCGTTTTTTCTTTATTACGTAATGCATTAGGTGTGCAACAAACACCTCCGAATATTG
CTATCTACGGTTTGGCTTTGGTATTGACGATTTTCATCATGGCTCCGGTCGGTTTGGAGGTGAATGAAAGCTTAAAAGGA
GAAAAATTATCACAGGATTTTGGCACTTTTGTCGAGCAAATTAACAGCAAAGCGCTCGATCCTTATCGTCAATTTCTTCT
TCATAACACCTCATCGGAGCAAATCAATTTTTTTTCCGATATGATTAAAAATAATTGGCCAAAAAAGTACCGTGATAAAG
TTGCTTCAGATTCATTGCTGATATTAATGCCCGCTTTTACCGTAAGCCAGCTTATTGAGGCCTTTAAAATAGGTCTATTA
CTTTATCTTCCTTTTGTGGCCATCGATTTGATCGTGTCCAATATTCTATTGGCGATGGGCATGATGATGATGTCACCTAT
GACCATTTCATTACCTTTCAAAATACTTATTTTCCTTCTGGTGGGAGGTTGGGACATGATATTGGGGCAATTGGCAGGAT
CTTACCGATGA

Protein sequence : 
MELVNSSYELITLLFLLSIFPLLVVMGTCFLKLSVVFSLLRNALGVQQTPPNIAIYGLALVLTIFIMAPVGLEVNESLKG
EKLSQDFGTFVEQINSKALDPYRQFLLHNTSSEQINFFSDMIKNNWPKKYRDKVASDSLLILMPAFTVSQLIEAFKIGLL
LYLPFVAIDLIVSNILLAMGMMMMSPMTISLPFKILIFLLVGGWDMILGQLAGSYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-65 75
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-51 62
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-51 62
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-51 62
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 8e-51 62
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 8e-51 62
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-47 58
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-38 53
unnamed AAL06354.1 EscR Virulence LEE Protein 8e-42 53
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-38 53
escR CAI43889.1 EscR protein Virulence LEE Protein 4e-40 53
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 7e-40 53
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 7e-40 53
escR AAC31528.1 L0049 Virulence LEE Protein 5e-40 53
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 6e-40 53
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 5e-40 53
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 6e-40 53
escR AAK26700.1 EscR Virulence LEE Protein 4e-40 53
escR AAL57527.1 EscR Virulence LEE Protein 4e-40 53
escR CAC81847.1 EscR protein Virulence LEE II Protein 4e-40 53
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-39 52
escR AAC38369.1 EscR Virulence LEE Protein 3e-39 52
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 7e-34 47
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 7e-34 47
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 7e-34 47
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-32 46
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-34 45
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-34 45
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-34 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-34 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-34 44
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-34 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-34 44
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 9e-35 44
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 4e-32 43
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-27 43
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-27 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 3e-28 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-28 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 7e-26 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 7e-26 41
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 1e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssaR YP_002924940.1 type III secretion system protein VFG0519 Protein 7e-52 62
ssaR YP_002924940.1 type III secretion system protein VFG0394 Protein 5e-46 56
ssaR YP_002924940.1 type III secretion system protein VFG0188 Protein 2e-46 54
ssaR YP_002924940.1 type III secretion system protein VFG0827 Protein 2e-40 53
ssaR YP_002924940.1 type III secretion system protein VFG0715 Protein 2e-39 52
ssaR YP_002924940.1 type III secretion system protein VFG0044 Protein 1e-37 47
ssaR YP_002924940.1 type III secretion system protein VFG1259 Protein 3e-28 43
ssaR YP_002924940.1 type III secretion system protein VFG1012 Protein 1e-27 41
ssaR YP_002924940.1 type III secretion system protein VFG2016 Protein 6e-26 41