Gene Information

Name : ssaU (HDEF_2248)
Accession : YP_002924937.1
Strain : Candidatus Hamiltonella defensa T5A
Genome accession: NC_012751
Putative virulence/resistance : Virulence
Product : secretion system apparatus protein SsaU
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4792
EC number : -
Position : 2023253 - 2024311 bp
Length : 1059 bp
Strand : -
Note : member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli

DNA sequence : 
ATGCCTGAAAAAAACGAAAAACCTACAGAGAAACGCATAAAAGAATCCCGGGAAAAGGGAGAGGTCATTAAAAGTGTCGA
AATTACTTCAGGCACACAATTGGCCATTATTCTCATTTATTTTTCATTAGTCGGGCCTAATCTAGTGAATTTGATGGGTC
TTTTAATTACCAGTAGTATAAAAAAATTAGATAAACCTATAGGCATTGCGGTACTCGATCTGACCTCTGAAATAGCCAGT
GTGTTTTTACAGATTATGGGAGTATTAGGAGGGGGATTAGCATTAGCGACCATACTGGTCGTTATGTCACAGGTTGGCCC
TCTACTCGCAATCAAAGCAATCGGTTTTAAAGGCCAACATATCAATCCTATCAGTAATTTTAAAAATTTGGTCTCCCTCC
GCAGCTTGTTTGAAATTTGTAAATCATTATTTAAAGTGATTTTAGTCTCTTTAATTTTTGCTTATCTACTTCGCGAATAT
GCACCTACCTTTGGATATTTATCGTATTGTGGCACTCATTGTGCTTTTCCGATATTTGGTACTTTAATGCAATGGTTGCT
GGGATCTTTGCTCGCGTGTTACGTGATATTTGGTATCTTGGACTACAGCTTTCAGCATTATAACACCATGAAAAAAATGA
AAATGTCCCGTGAAGAAATCAAACGTGAATACAAAGATACCGATGGTGATCCTGAAATAAAATCTAAACGTCGAGAATTA
CAACAGGAAATTCAAAGCGGAAGCCTCTCTAATAAAGTCAAAGGCTCAACCGCAGTGATTAAAAATCCCACTCATTTTGC
GGTGTGTTTATTTTATCATCCAGAAGAAGCGCCACTACCTATCGTGCTTGAAAAAGGAAAGGGAACAAGGGCTCAGACCA
TTATTAAATTAGCCGAAAAATTTGATGTGCCAGTGGTTGAAAATGTGAGACTCGCGCAAATGCTACATAATGAAGTGAAT
TGTGATGAAATTATCCCCGAGCATCTTTTTGAACCTGTGGCGGCGATATTACGTTTTGTCTTAAATTTAGAATATCAAGC
CGATGATGAATCAACATAA

Protein sequence : 
MPEKNEKPTEKRIKESREKGEVIKSVEITSGTQLAIILIYFSLVGPNLVNLMGLLITSSIKKLDKPIGIAVLDLTSEIAS
VFLQIMGVLGGGLALATILVVMSQVGPLLAIKAIGFKGQHINPISNFKNLVSLRSLFEICKSLFKVILVSLIFAYLLREY
APTFGYLSYCGTHCAFPIFGTLMQWLLGSLLACYVIFGILDYSFQHYNTMKKMKMSREEIKREYKDTDGDPEIKSKRREL
QQEIQSGSLSNKVKGSTAVIKNPTHFAVCLFYHPEEAPLPIVLEKGKGTRAQTIIKLAEKFDVPVVENVRLAQMLHNEVN
CDEIIPEHLFEPVAAILRFVLNLEYQADDEST

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0273 YP_002345355.1 secretion system apparatus protein SsaU Virulence Not named Protein 6e-109 58
ssaU NP_805093.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 9e-78 47
ssaU CAA68202.1 secretion system apparatus, SsaU Virulence SPI-2 Protein 1e-77 47
ssaU YP_216430.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 1e-76 47
ssaU NP_460387.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 2e-77 47
ssaU NP_456106.1 putative type III secretion protein Virulence SPI-2 Protein 9e-78 47
escU AFO66307.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-61 42
escU AFO66403.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-61 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssaU YP_002924937.1 secretion system apparatus protein SsaU VFG0522 Protein 8e-78 47