Gene Information

Name : yfeA (HDEF_2126)
Accession : YP_002924837.1
Strain : Candidatus Hamiltonella defensa T5A
Genome accession: NC_012751
Putative virulence/resistance : Virulence
Product : iron ABC transporter periplasmic iron binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1946682 - 1947665 bp
Length : 984 bp
Strand : -
Note : COG0803

DNA sequence :
ATGTTTAATAAATATAAAAATACGGTTTTAAACCAGAAACCTGTTGATTACGTTTTAAATCATTTTTTTTATCGCCTTCG
TTTTTTTTATCTCACATTATTATCGATTTCGTTGTTTTCAATCAGTACTTTTAACCATGCCGAAATATCGGCTTCTAAAA
ATCATAGGCTATTTAAAGTCATCACCACTTTCACCATTATTCAGGATATCGCCCAAAATATTGCAGGCGATGCGGCTGTG
GTAGAGTCCATTACTAAACCAGGCGCAGAAATCCATGGTTATCAGCCTACTCCACGCGATATTTTGAAAGCACAATCCGC
TGATTTAATTCTATGGAATGGGATGCACCTGGAACGTTGGTTCGAGCGTTTTTTTGAAAACATTAAACAGGTTCCTGCAG
TGATTGTGACCCAAAATATACAACCCTTACCTATCCGTGAGGGGCCTTACCATGGCATTCCTAACCCTCACGCCTGGATG
TCGCCTTCTAATGCTTTAATTTATATTGATAATATTTGCAACGCTTTCAAAAAACATGATCCCGAACATGCCGCTGTGTA
TCAACGAAATGCTGAGACTTATGCTCTTCAAATTCGTGCCCTAGATGCGCGATTGCGGGCACGTTTAGCTCGTATTCCAG
AAAATCAACGCTGGTTAGTCACCAGCGAAGGGGCTTTCAGTTATTTGGCACAAGATTACGCTTTCAAGGAAGCTTATTTG
TGGCCGATCAATGCAGAGGAGCAAGGATCTCCTCAGCAAGTTCGTAAAGTAATTGATATTGTTCGTCAATATCGCATCCC
CGTTGTATTTAGTGAAAGCACCATTTCTGACAAACCTGCAAAACAGGTCAGTAAAGAGACAGACGCACAATATGGGGGTA
TTCTTTATGTCGATTCCCTCTCCAATAAAAATGGGCCTGTACCTACTTATATCGATCTGCTCAACATCACAGTGCAAACG
ATAGCAAAAGGATTTGGTCAATGA

Protein sequence :
MFNKYKNTVLNQKPVDYVLNHFFYRLRFFYLTLLSISLFSISTFNHAEISASKNHRLFKVITTFTIIQDIAQNIAGDAAV
VESITKPGAEIHGYQPTPRDILKAQSADLILWNGMHLERWFERFFENIKQVPAVIVTQNIQPLPIREGPYHGIPNPHAWM
SPSNALIYIDNICNAFKKHDPEHAAVYQRNAETYALQIRALDARLRARLARIPENQRWLVTSEGAFSYLAQDYAFKEAYL
WPINAEEQGSPQQVRKVIDIVRQYRIPVVFSESTISDKPAKQVSKETDAQYGGILYVDSLSNKNGPVPTYIDLLNITVQT
IAKGFGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 2e-82 63
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 3e-82 63
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 3e-82 63
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 3e-82 63
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-82 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeA YP_002924837.1 iron ABC transporter periplasmic iron binding protein BAC0439 Protein 9e-100 78
yfeA YP_002924837.1 iron ABC transporter periplasmic iron binding protein BAC0349 Protein 1e-82 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeA YP_002924837.1 iron ABC transporter periplasmic iron binding protein VFG0525 Protein 1e-82 63