Gene Information

Name : yfeC (HDEF_2124)
Accession : YP_002924835.1
Strain : Candidatus Hamiltonella defensa T5A
Genome accession: NC_012751
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1944919 - 1945794 bp
Length : 876 bp
Strand : -
Note : COG1108

DNA sequence :
ATGTGGGACATTTTACTGCAACCCTTTCATTACAATTACATGGTCAAAGCAATATGGGTGAGTACCATTGTCGGGGCAAC
CTGTGCTTTCCTTTCTGCTTATTTGATGTTGAAAGGCTGGTCACTGATGGGGGACGCGCTTGCTCACTCTGTTGTTCCAG
GCGTCGCCGGGGCGTATGCCTTAGGGTTACCTTATGCGGCAGGCGCATTTTTTACGGGGATGCTGGCTGCTCTATCAATG
ACGCTGATGCGACATATCACTTCCTTACGTGAAGATGCGATTATTGGTTTTATTTTTTCGACATTTTTTGCGGCTGGGTT
ATTGATCCTTTCGTTGAATCCCACCTCAATTAATGTGCAATCTATTATTTTCGGCAATATATTAGGGATTGCTGATCATG
ATGTATGGCAGGTTCAACTCATTATTTTTATTTCTTTTTTCACGCTCTGCATCATTTGGAAAGATTTATTGGTGGTCTTT
TTTGATGAAAATCATGCGGTTTCTATCGGCTTATCACCGTTTCGATTAAAAATTATCTTTTTTACACTTCTGAGTGCCTG
CACGGTTGCAGCATTGCAAACGGTGGGCGCCATTTTAGTGATCTCTATGGTGATCACACCTGGCGCAACCGCTTATCTTC
TAACAGATCGTTTTGGCTATTTGTTGATCATGGCGATCGTGATTGGTGCCGTGACCAGTGCGCTTGGTGCTTATTTCAGC
TTTTACCTTAATGGTTCCACAGGCGGGATCATCGTCACTCTACAAACGTTGTTCTTTTTATTGGCTTTTTATTTTTCTCC
TAAATATGGTGTACTGGCTCGCCGTTATCATGTCTATAAAAAAAATCGCCTCAGTCTTCCTCAAGGAAAATCTTGA

Protein sequence :
MWDILLQPFHYNYMVKAIWVSTIVGATCAFLSAYLMLKGWSLMGDALAHSVVPGVAGAYALGLPYAAGAFFTGMLAALSM
TLMRHITSLREDAIIGFIFSTFFAAGLLILSLNPTSINVQSIIFGNILGIADHDVWQVQLIIFISFFTLCIIWKDLLVVF
FDENHAVSIGLSPFRLKIIFFTLLSACTVAALQTVGAILVISMVITPGATAYLLTDRFGYLLIMAIVIGAVTSALGAYFS
FYLNGSTGGIIVTLQTLFFLLAFYFSPKYGVLARRYHVYKKNRLSLPQGKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-65 62
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-65 62
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-65 62
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-65 62
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-65 62

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC YP_002924835.1 chelated iron transport system membrane protein BAC0441 Protein 1e-93 80
yfeC YP_002924835.1 chelated iron transport system membrane protein BAC0351 Protein 7e-66 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC YP_002924835.1 chelated iron transport system membrane protein VFG0527 Protein 6e-66 62