Gene Information

Name : yfeD (HDEF_2123)
Accession : YP_002924834.1
Strain : Candidatus Hamiltonella defensa T5A
Genome accession: NC_012751
Putative virulence/resistance : Virulence
Product : iron ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1944089 - 1944919 bp
Length : 831 bp
Strand : -
Note : COG1108

DNA sequence : 
ATGAATACTGTTTTCAATCTGATCACGGAACCTTTTATTTATCCTTTTATGCAACGGGCCTTAATGATTGCCGTAGTGAC
AGGCATGGTATGTGCCGTGCTTTCATGCTACCTGGTACTCAAAGGTTGGTCATTAATGGGGGATGCCATCTCTCATGCGG
TATTACCCGGCATTGTGCTTGCCTTTTTATCAGGAATACCATTATCAATAGGCGCATTTGCTTCTGGCATTTTTTGCGCT
TTTGCCACTGGATATATCAAAGAAAACAGTAGAGTCAAACAAGATACTGTAATGGGCATCGTTTTTTCAGGCATGTTTGC
GTTGGGTCTTGTTTTATTTTCAACTGTGGATACGGATCAACATCTCAGTCATATTTTATTCGGTCATATATTGGGCGTTT
CAATATCTGAATTTCATCAAACCCTCTGGATCTCTGGGGTGACTTTTTTTGTAATGCTATTAAAACGTAAAGATTTTATG
TTGTACTGTTTTGATAATAATCATGCCAAAGTCATCGGATTACCTGTTACATTATTACATTATGGGTTGCTTTGTTTACT
TTCATTGACGATTGTGGCTTCTTTTCAAGCGGTTGGAGTGATATTGGTGATAGCGATGTTGATAGCACCTGGTATGACTG
CTTTGATGCTATGTCAACAATTTCATCAAATGCTGATCATCGCGAGCCTGGTTTCAGTGATTTCCTGTGTTTCCGGCATT
TTATTGAGCTTTCATATCGATGGTGCTACAGGGCCTTGTATTGTGATAGTACAGGCAGTCATTTTTATGACTTCATTAAT
TTACAAGCAAATCAATGGCATCAAAAAATGA

Protein sequence : 
MNTVFNLITEPFIYPFMQRALMIAVVTGMVCAVLSCYLVLKGWSLMGDAISHAVLPGIVLAFLSGIPLSIGAFASGIFCA
FATGYIKENSRVKQDTVMGIVFSGMFALGLVLFSTVDTDQHLSHILFGHILGVSISEFHQTLWISGVTFFVMLLKRKDFM
LYCFDNNHAKVIGLPVTLLHYGLLCLLSLTIVASFQAVGVILVIAMLIAPGMTALMLCQQFHQMLIIASLVSVISCVSGI
LLSFHIDGATGPCIVIVQAVIFMTSLIYKQINGIKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-58 54
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-58 54
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-58 54
sitD NP_461785.1 permease Virulence SPI-1 Protein 8e-59 54
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 6e-59 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_002924834.1 iron ABC transporter permease BAC0442 Protein 1e-95 77
yfeD YP_002924834.1 iron ABC transporter permease BAC0352 Protein 4e-59 54
yfeD YP_002924834.1 iron ABC transporter permease BAC0441 Protein 3e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_002924834.1 iron ABC transporter permease VFG0528 Protein 3e-59 54