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Name : siiD (HDEF_1961) Accession : YP_002924695.1 Strain : Candidatus Hamiltonella defensa T5A Genome accession: NC_012751 Putative virulence/resistance : Virulence Product : type I transport system, membrane permease HylD family Function : - COG functional category : V : Defense mechanisms COG ID : COG1566 EC number : - Position : 1793531 - 1794805 bp Length : 1275 bp Strand : + Note : COG0845 DNA sequence : ATGAACAGGAAACAAACTGACACCCTGATGATGATGATGATAATGAGCCTGATCATTATCATCGCCGCTTCTATTATCAA AGTAAATTCGGTGATTCATGGCCAAGGCATGATAACGAACCGTGATAACACTCAATTTATTTCCTTATCAAAAGGCGGCG TGATTGAGAAAATCTATGTTTCAGAAGGGGAAAGCGTTAAAAGGGGCGCTCTCCTTGCTAAAGTGATCAACCTCGATTTA AGAAAGGAATATGAACGATTAAAAGCCCAGAAAGCATTTTTAGTGAAAGACATTGAGGAGCTGACGTCGCTTTTAAATAA GAATGCGGTAGAAGATTTTTCTGCGTGGCAAGACATCAGCTTAATAAAAAATAAAGAGTTGTCAGCGAATATTGAATTAG TGAAAAGTCAAATTCATACGAAAACGCTCAAGCTGGGTTCGCTTGAATCTGAAATTACGGGGATGAAAATGCAACTGAAA GGGAAAAAAGAACAGGTTGCACTTCTGGGTGAAGAGGTGGATATATTGCACCCTTTGGTAAAAAAAGGGATCACGTCGTA TACGAATTATCTGAATAAAAAGCAGGCATTTATTAAGTTAAAATCAGAGATGGACGAGACGGAAAATAACATTATTTTAA AAAAAAATGACAGTCATTTAGTGAAAAATGAAATTCGAGCCCTGGATAACGAATTACGGCTGTCATTATCCCGTCAACTG TCAAAAGATCAGCAAGAGCTGAATTTGATGAGCACGCCGTTAAAAATTTTTGAGCAACAAATAGAGGAAGAAAATGTTCG AGCTCCGGTCAATGGGGTGATTTATAAAATTAATAAAAGCGCTTCAACTCAAGGGGGGGTTATCCAGGCGGCAGATCTGT TATTCGAGATCAAACCTTCGGTCAATACCATGCAAGCAGAGATAAAAGTGAATCCTAAATATCGTGATCAACTCTATGTA GGTGAACAGGCGCTGGTGGATATCTTGTCTCTGGTGAAAGCCAAGGGGAAATTTTATCAAGCCAGCATTGAAAAAATCAG CCCGGATTCTTACGAGGAGAACACAAATGGGAGTGTGCAGCGTTATTACAAAGTCATCATTAGTTTTAATGTCAAAAATG AAGACATGGATTGGTTAAAACCTGGTATGGCGGTTGATGCCAGAGTGGTGACAGGAAAACACTCGATTATGTCCTATCTT ATTTCACCTTTAACAAAAGGAATCAGTCATGTTTTCTCAGAACCGGTACATTTAACGCAATATAACAAACCTTAA Protein sequence : MNRKQTDTLMMMMIMSLIIIIAASIIKVNSVIHGQGMITNRDNTQFISLSKGGVIEKIYVSEGESVKRGALLAKVINLDL RKEYERLKAQKAFLVKDIEELTSLLNKNAVEDFSAWQDISLIKNKELSANIELVKSQIHTKTLKLGSLESEITGMKMQLK GKKEQVALLGEEVDILHPLVKKGITSYTNYLNKKQAFIKLKSEMDETENNIILKKNDSHLVKNEIRALDNELRLSLSRQL SKDQQELNLMSTPLKIFEQQIEEENVRAPVNGVIYKINKSASTQGGVIQAADLLFEIKPSVNTMQAEIKVNPKYRDQLYV GEQALVDILSLVKAKGKFYQASIEKISPDSYEENTNGSVQRYYKVIISFNVKNEDMDWLKPGMAVDARVVTGKHSIMSYL ISPLTKGISHVFSEPVHLTQYNKP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STM4260 | NP_463125.1 | cation efflux pump | Not tested | SPI-4 | Protein | 7e-121 | 59 |
| spi4_D | AAC26642.1 | HLYD family secretion protein | Virulence | SPI-4 | Protein | 5e-121 | 59 |
| siiD | CAE11796.1 | putative type-I secretion protein, putative inner membrane component | Virulence | SPI-4 | Protein | 5e-121 | 59 |
| STY4457 | NP_458557.1 | putative type-I secretion protein | Not tested | SPI-4 | Protein | 3e-120 | 59 |
| SC4139 | YP_219126.1 | membrane permease, cation efflux pump | Not tested | SPI-4 | Protein | 7e-121 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| siiD | YP_002924695.1 | type I transport system, membrane permease HylD family | VFG0580 | Protein | 3e-121 | 59 |
