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Name : siiC (HDEF_1960) Accession : YP_002924694.1 Strain : Candidatus Hamiltonella defensa T5A Genome accession: NC_012751 Putative virulence/resistance : Virulence Product : type I transport system, outer membrane efflux protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1538 EC number : - Position : 1792198 - 1793526 bp Length : 1329 bp Strand : + Note : COG1538 DNA sequence : ATGAGGATGAGAATGAAAAATAAAATAATGGCTTTCATTTTATGCTCCCAATCTTATATTTCTGCTGCGGCGGTAAACCA ACCTCATTCCCATTCTTTAACAAGGCTGATCAAAGCGGCCATGCAACATCAACCTTCCGTCAAAATTGCTTACTATGAAA CAGAACGTAAAAAAGGAGATTTACAAACAGCAAAATCCGCGCTTTATCCTACTTTAGATTACAGTGCTGCCGGCACCGGA ATAAAGAAACAATCGTCGGATAGTGAAAAAAATATTGAAAATAAAGTGTCTGTGGCTTATCGAGTCACCGATTTTGGGGT GAGATCAGCGACGATTAGAAGAGCAGAATACGAAAAAGAGGGCTCGCATTTCGATTATGCCAAATCTCAAAACTCTGTCG CTCAAGAAGTCAGCGACTCTTACTTAAATATTAATAAATACAAAGAAATATTAGAGGGGATTGTTAAAGAAAAAGCCTTT TATAAAAAGATGCTGGATAATTTTTCTTTACTGGTTTCATCGGGGGTGGCTCTCGAGTCTGATTTGAGAAAAGTACAGGT CTCAATTGATTCACTCAATAGCCGCGAAATTATGTATCAATCGATGCTAGATTCAGAAATGTTTAAACTTAAAAATATGA CGGGCCTAAGGAGCCTCTCTTCTGAACAGGTAGGTCAGCCTCATATCTTGCTTGAACGGTATGCTTTCATCAGTGATCGA GCCAAAATGATGCAAAAAATAAAGCTGTTTAACCACGATTATCATATTTTGCTTCAATCACAAAATGCGGCACTGGAAGA AATGAACGGGGCGCATTCTTCTTACTTTCCCGCCGTCGATCTGAGCGCAGAATATGTGGATAACCATCCGCTTGGCAATA CAGATCGTAATACTTATAAAAATGAAGGCCGAGTGAAACTTAATGTCAGCCTCAATCTTTTTAATGGATTTAAAAATAGC GCACAAGATTTAAAAGTTTCCTCGGCTTATACTCAATCTAAATTACGCATCGAAGAGTTTTTACTCAAAGCGCAATTTGA AATCAATAATATGATTTCTCAATACGCCGCTGCAAAAGAAACTTATGTCGTGAATCAACGTTCTTATGAAAATGCGCTTC AACTGTCGACTCTTTATGAAAAAGAGTTTGATCTGGGTCAAAAAACCTTGTTAGACCTGATTTCTAGCAGAGGGGAATAT TTTCAGTCTTTTATCAACATGATTGAGAGTGAATACTCTCAGCGACAGGCGAAATCAAGACAATTAGGGTTGATGTCTCA ATTAACGAATTACTTAGGGGTGAGCCAAACTCCTCAAGCGGAAAAATAG Protein sequence : MRMRMKNKIMAFILCSQSYISAAAVNQPHSHSLTRLIKAAMQHQPSVKIAYYETERKKGDLQTAKSALYPTLDYSAAGTG IKKQSSDSEKNIENKVSVAYRVTDFGVRSATIRRAEYEKEGSHFDYAKSQNSVAQEVSDSYLNINKYKEILEGIVKEKAF YKKMLDNFSLLVSSGVALESDLRKVQVSIDSLNSREIMYQSMLDSEMFKLKNMTGLRSLSSEQVGQPHILLERYAFISDR AKMMQKIKLFNHDYHILLQSQNAALEEMNGAHSSYFPAVDLSAEYVDNHPLGNTDRNTYKNEGRVKLNVSLNLFNGFKNS AQDLKVSSAYTQSKLRIEEFLLKAQFEINNMISQYAAAKETYVVNQRSYENALQLSTLYEKEFDLGQKTLLDLISSRGEY FQSFINMIESEYSQRQAKSRQLGLMSQLTNYLGVSQTPQAEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| spi4_C | AAC26641.1 | ABC exporter outer membrane component homolog | Virulence | SPI-4 | Protein | 2e-111 | 52 |
| siiC | CAE11795.1 | putative type-I secretion protein, putative outer membrane component | Virulence | SPI-4 | Protein | 1e-111 | 52 |
| SC4138 | YP_219125.1 | ABC transporter outer membrane protein | Not tested | SPI-4 | Protein | 1e-111 | 52 |
| STM4259 | NP_463124.1 | ABC exporter outer membrane component | Not tested | SPI-4 | Protein | 1e-111 | 52 |
| STY4456 | NP_458556.1 | putative type-I secretion protein | Not tested | SPI-4 | Protein | 6e-112 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| siiC | YP_002924694.1 | type I transport system, outer membrane efflux protein | VFG0579 | Protein | 6e-112 | 52 |
