Gene Information

Name : tktB (HDEF_1525)
Accession : YP_002924296.1
Strain : Candidatus Hamiltonella defensa T5A
Genome accession: NC_012751
Putative virulence/resistance : Unknown
Product : transketolase 2, thiamin-binding, isozyme
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0021
EC number : -
Position : 1400899 - 1402908 bp
Length : 2010 bp
Strand : +
Note : COG0021

DNA sequence :
ATGATTTTTCATCAAACCCTCTCTAGAAAAGAATGCGCTAATGCCATTCGCGCGCTCAGTATAGATGCGGTACAAAAAGC
AGGATCAGGGCATCCAGGTGCCCCGATGGGTATGGCAGATATCGCCCAGGTGTTATGGTGTGATTATTTAAAACACAATC
CACGACACCCTGATTGGTGTGACAGAGATCGCTTTGTTTTATCGAACGGGCATGCTTCCATGTTGCTTTATAGCCTGCTG
CATCTCACAGGCTACGATCTTTCGATAGAAGAAATAAAAAATTTCAGACAACTACATTCTAAAACACCAGGGCACCCAGA
ATATGGCTATACGCCTGGGGTAGAAACCACCACAGGCCCCTTAGGGCAAGGGATTGCAAATGCCGTGGGTTTGGCGATTG
CAGAGCGAACCCTGGGTGCCCAGTTTAATCGTCATGGATACCCTATAGTGGATCATCATACCTATGCTTTTATGGGAGAT
GGATGCATGATGGAAGGGATTTCTCATGAGGTCTGTTCATTAGCGGGCACGTTACAATTAGGGAAATTGATTGTCTTTTA
CGATGACAACGATATTTCTATTGATGGTCATGTGAGCGGATGGTTTACGGATAATACGGCCGGGCGTTTCATGGCTTATG
GTTGGCATGTCATTGACACAATAGATGGCCATCATCCTGAGTCGATTAAATCGGCTATTGAAGAAGCACGTTCTGTTCCA
GACAAACCCTCGTTATTGATTTGTAAAACCACCATTGGTTATGGTTCGCCAAACAAAGCCGGCAGTCATGATGTGCACGG
CGCGCCTTTAGGTACCGCTGAGGTTGAGGCCGTGCGAGCAGAGCTTGGGTGGCCATATCCTCCTTTTGAGATCCCCAGTG
AGATATATCAGGCTTGGGATGCAAAAGAAAAAGGCCAATCGCAACAAGCGCGTTGGGACCAATTGTTTTCAGATTATGCC
AAAGCGTACCCCGAGCTGGCCTTAGAATTTAAGCGCCGCATCCAGGGTGCATTACCGGCTGATTTTGAGCCTCAATCCCA
TCAATTTATTCAAAATTTACAAGCGAATCCGGCGAACATTGCGAGCCGTAAAGCTTCCCAAAACACTTTAGAGGCTTTTG
GCCAAATATTACCAGAATTGATGGGGGGATCTGCCGATTTAGCGCCCAGTAATTTAACCCTTTGGTCTGGTTCCAAATCT
ATCAAAACAGATCCCATGGGCAATTACATTCATTACGGTGTCAGAGAATTTGGCATGTCGGCCATCATGAACGGCATCGC
GCTTCATAGTGGCTTTATTCCTTATGGCGCGACCTTTTTGATGTTTGTTGAATATGCACGAAACGCAGTGCGTATGGCGG
CTTTGATGAAAATTCGCTGTCTTTTCGTTTACACCCATGATTCTATTGGATTAGGAGAAGACGGCCCGACTCATCAACCG
GTGGAACAAATGGCCAGCTTACGTGTCACACCCAATTTAAGTGTATGGCGCCCTTGCGATCAGGTGGAATCGGCCGTCGC
ATGGCAATTGAGCGTCCAACGGACAGAAGGCCCCAGTGTGCTGATTTTTTCTCGCCAAAATTTACAACAACAATCAAGAA
CACAAAAACAATTAGACAGCATCAAAAAAGGGGGATACATCCTCAAAGATGCTGAAGGTCAGCCTGAATTAATTTTGATG
GCAACAGGATCTGAAGTGAGTTTAGCCATCTCGGCAGCTGAACGATTAACTGAAATGGGTCATAAAGTGCGAGTGGTTTC
TATGCCTTCCACTGATCTGTTTGATCAACAGACTGCAAAGTATCGCGATGAGGTTTTACCTGGCAAAGTGTCTGCTCGAT
TAGCCATAGAAGCGGGTATTGCCGATTTTTGGTACAAATATGTAGGCCTGAAAGGTGACGTCATTGGCATGAGCAGTTTT
GGCGAATCGGCACCCGCCGAGTGTTTGTTTAAAGCATTTGGTTTCACGATTGATCATGTGGTTGCCAAAGCAAAAGCGCT
TTTACAATAA

Protein sequence :
MIFHQTLSRKECANAIRALSIDAVQKAGSGHPGAPMGMADIAQVLWCDYLKHNPRHPDWCDRDRFVLSNGHASMLLYSLL
HLTGYDLSIEEIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGIANAVGLAIAERTLGAQFNRHGYPIVDHHTYAFMGD
GCMMEGISHEVCSLAGTLQLGKLIVFYDDNDISIDGHVSGWFTDNTAGRFMAYGWHVIDTIDGHHPESIKSAIEEARSVP
DKPSLLICKTTIGYGSPNKAGSHDVHGAPLGTAEVEAVRAELGWPYPPFEIPSEIYQAWDAKEKGQSQQARWDQLFSDYA
KAYPELALEFKRRIQGALPADFEPQSHQFIQNLQANPANIASRKASQNTLEAFGQILPELMGGSADLAPSNLTLWSGSKS
IKTDPMGNYIHYGVREFGMSAIMNGIALHSGFIPYGATFLMFVEYARNAVRMAALMKIRCLFVYTHDSIGLGEDGPTHQP
VEQMASLRVTPNLSVWRPCDQVESAVAWQLSVQRTEGPSVLIFSRQNLQQQSRTQKQLDSIKKGGYILKDAEGQPELILM
ATGSEVSLAISAAERLTEMGHKVRVVSMPSTDLFDQQTAKYRDEVLPGKVSARLAIEAGIADFWYKYVGLKGDVIGMSSF
GESAPAECLFKAFGFTIDHVVAKAKALLQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tktA AAO17218.1 TktA Not tested tcd island Protein 0.0 77
APECO1_2641 YP_859417.1 transketolase Not tested Not named Protein 0.0 67