|
Name : spaP (HDEF_1506) Accession : YP_002924278.1 Strain : Candidatus Hamiltonella defensa T5A Genome accession: NC_012751 Putative virulence/resistance : Virulence Product : surface presentation of antigens protein SpaP Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4790 EC number : - Position : 1379991 - 1380656 bp Length : 666 bp Strand : + Note : part of a type III secretory system probably involved in invasion into eukaryotic cells DNA sequence : ATGGACAATGACATTTCACTCATTTCAATTCTTGCATTTTCAACATTATTACCCTTCGTCATCGCATCAGGCACTTGCTA TATCAAATTTTCGATTGTGTTTGTGATGGTCAGAAATGCCCTCGGATTGCAGCAGATCCCGTCAAATATGACCCTCAATG GTGTCGCTTTGCTGTTAGCCAGTTTTGTGATGATGCCTATTGTCAAAAACATCTATGAAGGCCATAAAAATGCACAATTC GATGTCAGAAACCTTTCCTCGGTGATCGAATTCGTTGAAAATGGTCTCGATGGCTATCGTTCTTATCTTGTCAAATATGC AGATCCAGAGTTAACCCAATTTTTTGAAAAAGCCGCCTCTGACAGAAAGGAAGAAGATTTTGCTGGTGCCGAAGAGGAAA AACCCTCTATCTTTGCTCTTTTGCCTGCATACGCGTTAAGCGAAATCAAAAGCGCATTTAAAATTGGTTTTTACATTTAT TTGCCCTTTGTGGTGGTTGATTTATTGATATCCAGCATTCTACTGGCGTTGGGGATGATGATGATGAGCCCTGTCACCAT TTCTGTGCCGATCAAACTGGTCTTATTTGTTGTATTAGATGGCTGGACCCTGATTTCTAAAGGAATGATTTTACAATATA TGGATTTAGCTGGAGCCAGCTCTTGA Protein sequence : MDNDISLISILAFSTLLPFVIASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIVKNIYEGHKNAQF DVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFAGAEEEKPSIFALLPAYALSEIKSAFKIGFYIY LPFVVVDLLISSILLALGMMMMSPVTISVPIKLVLFVVLDGWTLISKGMILQYMDLAGASS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| spaP | NP_457284.1 | secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 1e-59 | 71 |
| spaP | NP_806493.1 | surface presentation of antigens protein SpaP | Virulence | SPI-1 | Protein | 1e-59 | 71 |
| spaP | YP_217809.1 | surface presentation of antigens protein SpaP | Virulence | SPI-1 | Protein | 4e-60 | 71 |
| spaP | NP_461811.1 | surface presentation of antigens protein SpaP | Virulence | SPI-1 | Protein | 4e-60 | 71 |
| spaP | NP_311752.1 | surface presentation of antigens protein SpaP | Not tested | LIM | Protein | 7e-64 | 68 |
| epaP | AAZ31293.1 | EpaP | Virulence | ETT2 | Protein | 6e-62 | 67 |
| spaP | AAS66865.1 | SpaP | Not tested | SSR-2 | Protein | 9e-63 | 64 |
| ysaR | AAS66846.1 | YsaR | Not tested | SSR-1 | Protein | 6e-55 | 59 |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 1e-30 | 44 |
| ECs4583 | NP_312610.1 | type III secretion system protein | Virulence | LEE | Protein | 1e-30 | 43 |
| escR | AAC38369.1 | EscR | Virulence | LEE | Protein | 8e-30 | 43 |
| escR | AAC31528.1 | L0049 | Virulence | LEE | Protein | 1e-30 | 43 |
| escR | ACU09473.1 | type III secretion system protein EscR | Virulence | LEE | Protein | 1e-30 | 43 |
| escR | YP_003236103.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 2e-30 | 43 |
| escR | AAK26700.1 | EscR | Virulence | LEE | Protein | 1e-30 | 43 |
| escR | NP_290283.1 | type III secretion system protein | Virulence | LEE | Protein | 2e-30 | 43 |
| escR | AAL57527.1 | EscR | Virulence | LEE | Protein | 1e-30 | 43 |
| escR | YP_003223490.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 2e-30 | 43 |
| escR | CAC81847.1 | EscR protein | Virulence | LEE II | Protein | 1e-30 | 43 |
| escR | YP_003232138.1 | type III secretion system protein | Virulence | LEE | Protein | 2e-30 | 43 |
| escR | CAI43889.1 | EscR protein | Virulence | LEE | Protein | 1e-30 | 43 |
| escR | AFO66317.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-27 | 42 |
| escR | AFO66400.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-27 | 42 |
| unnamed | AAL06354.1 | EscR | Virulence | LEE | Protein | 1e-28 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| spaP | YP_002924278.1 | surface presentation of antigens protein SpaP | VFG0551 | Protein | 2e-60 | 71 |
| spaP | YP_002924278.1 | surface presentation of antigens protein SpaP | VFG1773 | Protein | 2e-60 | 63 |
| spaP | YP_002924278.1 | surface presentation of antigens protein SpaP | VFG1012 | Protein | 7e-56 | 62 |
| spaP | YP_002924278.1 | surface presentation of antigens protein SpaP | VFG2455 | Protein | 1e-55 | 57 |
| spaP | YP_002924278.1 | surface presentation of antigens protein SpaP | VFG0394 | Protein | 4e-32 | 44 |
| spaP | YP_002924278.1 | surface presentation of antigens protein SpaP | VFG0715 | Protein | 4e-30 | 43 |
| spaP | YP_002924278.1 | surface presentation of antigens protein SpaP | VFG0827 | Protein | 7e-31 | 43 |
| spaP | YP_002924278.1 | surface presentation of antigens protein SpaP | VFG0188 | Protein | 7e-31 | 42 |
