Gene Information

Name : HDEF_0150 (HDEF_0150)
Accession : YP_002923071.1
Strain : Candidatus Hamiltonella defensa T5A
Genome accession: NC_012751
Putative virulence/resistance : Virulence
Product : LuxR/UhpA family two-component regulatory system regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 155062 - 155694 bp
Length : 633 bp
Strand : +
Note : COG2197

DNA sequence : 
ATGAACGTAAAAATATTGATCGTAGATGATCATGAGCTCATTATTAATGGTATCAAAAATATGCTCTCGCCTTATAAACG
TTATCAAGTAGTAGGGCAAACAGAGAATGGATTAGATGTTTATAATTTATGTGTTCAAACAGAGCCTGATATGGTCATCC
TGGATTTAGGATTACCTGGAATGAATGGTCAAGAAGTGATTTTACAATTACATCGCCGATGGCCACAACTGAACATTTTA
GTCTTAACTGCTCGAGAAGAAGAGCATTATGCGAGTCAAACATTAAAAATGGGGGCTCTGGGTTATGTGATTAAAAAAAG
CCCTCAACAAATTTTAATGGCGGCGGTGCAAACCGTACTTGCAGGGAAACAATATATAGACCCTACTTTAAATGTGGATA
GTGTACTGAAATTAATCAAAGAATCGGAGCATTATCCTTCTATATTAACCTCACGGGAACGACAAATTCTCAAACTGATT
ACAGAAGGGGTCTCCAATCGAATCATTGCAGACAGGCTTTATATCAGTGAAAAAACGGTAGAAACACATCGTCTTAATAT
GATGAAAAAACTTGATGTCCACAAAGTAGCTCAATTGATTCAGTGGTCGCAACGTTTAGGTATCAATATTTAG

Protein sequence : 
MNVKILIVDDHELIINGIKNMLSPYKRYQVVGQTENGLDVYNLCVQTEPDMVILDLGLPGMNGQEVILQLHRRWPQLNIL
VLTAREEEHYASQTLKMGALGYVIKKSPQQILMAAVQTVLAGKQYIDPTLNVDSVLKLIKESEHYPSILTSRERQILKLI
TEGVSNRIIADRLYISEKTVETHRLNMMKKLDVHKVAQLIQWSQRLGINI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0255 YP_002345335.1 two-component response regulator Not tested Not named Protein 1e-74 73
ssrB YP_216399.1 secretion system transcriptonal activator Virulence SPI-2 Protein 1e-48 56
ssrB NP_460356.1 transcriptional activator Virulence SPI-2 Protein 4e-48 55
ssrB NP_456137.1 putative two-component response regulator Virulence SPI-2 Protein 4e-48 55
ssrB NP_805062.1 two-component response regulator Virulence SPI-2 Protein 4e-48 55
ssrB CAB09344.1 SsrB Virulence SPI-2 Protein 2e-42 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HDEF_0150 YP_002923071.1 LuxR/UhpA family two-component regulatory system regulator VFG0492 Protein 1e-48 55