Gene Information

Name : ssaC (HDEF_0147)
Accession : YP_002923068.1
Strain : Candidatus Hamiltonella defensa T5A
Genome accession: NC_012751
Putative virulence/resistance : Virulence
Product : type III outer membrane secretin precursor
Function : -
COG functional category : N : Cell motility
COG ID : COG1450
EC number : -
Position : 150062 - 151552 bp
Length : 1491 bp
Strand : -
Note : COG1450

DNA sequence : 
ATGAAAAAAATCATCAGCCTTTTTATCTGTTTTTTGTTAAGCAACCCCTTTTTAAAGGCACAGACCATTCATTGGCAAGG
TGCCCCGTTTTTTATTTACACTCATGGCATCTCGCTTGGAAAACTTCTAAAAGAAATCGGGCTTAACTACGGTATTCCTG
TGATCGTAAGCCCCGACATTACTGACACTTTTTCCGGCGAATTAAAAGATAAAACCCCTAATCAAATGTTAGATGAGTTA
TCCACTCGATATAATTTGACGTGGTATTTTGATGGTGATGTCATTTATTTTTATAAAATTCAAGATATTAAAAAGCAGAT
TCTGTCTTCTGGTGATTTACCCATCAAAGCATTAATTAAGTATTTAAAAAATAGCGGCCTCCCTAATGGGAAAAATTGTG
CCTTAAAAGCCTTGACTCGTCTTAATACAGTAGAAATCAGCGGTGTGCCTGTGTGTATTGAGCGTGCAACCCAGTTAACC
TCATTATTAAATACACAACGGCAAAATTATAATGACAATAAACAAGCCGTCCGGGTGTTTTCACTGAAGTATGCTTCAGC
CACTGATACCACTTATCAATATCGTGATCAAAAAGTGACTTTACCAGGATTAGTGAGTGTTTTACGTGACATGAATTCAC
AAAATACCATCGCTATAGGAGAAAATAAAACCTCTGGCAAAGATCAATCTTTAGGGTTACCCCTATTTTCGGCCGATCCT
CGTCAAAACGCCCTCATTGTGAGGGATAGAGTGGTTAACATGCCAATTTATGCCAGTTTAGTAAAACAACTTGATGTTCG
CCCGATTGAAATAGAAATTTCAGTCGCGATTATTGATGTTGATGCCTCGGATATAAACCAGTTAGGTATTAATTGGGAGG
CTTCTGCGTCTCTGGGCGGTGGTAAAGTTTCGTTTAATAAGGGTTTTATATCCAGTGATGACGGTGGATTTTCTACCGTT
GTGGGCAATGATTTCATGGTACGAATTAATGCGTTAGAACAACATTCAAAAGCTCGGGTTTTATCGCGTCCTTCTATAGT
CACTCTAAACAATATTCAAGCGGTGCTGGATAAAAACGTGACATTTTATACGAAATTACAAGGGGATAAGGTGGCAAAAC
TAGATTCAAGAACGACGGGTACCCTGATGCAGGTCACACCTAGAATGATTAAAGATAAAGGCAAAGAAGACGTACTATTA
AATCTCGATATTCAAGATGGTCAGCAGAGACCTTCTATTAATAATACAACCGAAATACTACCTCAAATAGATAATTCTCA
AATTACGACTCAAGCAGTTCTTAAACCTGGACAAAATCTTTTATTGGGAGGATTTATTCAAGATAGTCAAAAAGCTTCAA
AGCACAAAATTCCTTTATTGGGAGACATTCCTTTAATTGGAGGACTATTTCGTAGTTCAAGCAAACAATCCAGTAGTGTT
GTCAGATTATTTTTAATAAAAGCTGTGCCGGTGAAGAATAAAAGGCAATAA

Protein sequence : 
MKKIISLFICFLLSNPFLKAQTIHWQGAPFFIYTHGISLGKLLKEIGLNYGIPVIVSPDITDTFSGELKDKTPNQMLDEL
STRYNLTWYFDGDVIYFYKIQDIKKQILSSGDLPIKALIKYLKNSGLPNGKNCALKALTRLNTVEISGVPVCIERATQLT
SLLNTQRQNYNDNKQAVRVFSLKYASATDTTYQYRDQKVTLPGLVSVLRDMNSQNTIAIGENKTSGKDQSLGLPLFSADP
RQNALIVRDRVVNMPIYASLVKQLDVRPIEIEISVAIIDVDASDINQLGINWEASASLGGGKVSFNKGFISSDDGGFSTV
VGNDFMVRINALEQHSKARVLSRPSIVTLNNIQAVLDKNVTFYTKLQGDKVAKLDSRTTGTLMQVTPRMIKDKGKEDVLL
NLDIQDGQQRPSINNTTEILPQIDNSQITTQAVLKPGQNLLLGGFIQDSQKASKHKIPLLGDIPLIGGLFRSSSKQSSSV
VRLFLIKAVPVKNKRQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0257 YP_002345337.1 type III secretion protein Virulence Not named Protein 1e-142 59
ssaC YP_216402.1 secretion system apparatus protein SsaC Virulence SPI-2 Protein 4e-103 50
ssaC NP_460359.1 outer membrane secretin precursor Virulence SPI-2 Protein 8e-103 50
spiA NP_456134.1 putative outer membrane secretory protein Virulence SPI-2 Protein 5e-103 50
spiA AAC44301.1 SpiA Virulence SPI-2 Protein 6e-103 50
spiA NP_805065.1 outer membrane secretory protein Virulence SPI-2 Protein 5e-103 50
escC AFO66299.1 putative type III complex subunit Virulence SESS LEE Protein 9e-107 48
escC AFO66408.1 putative type III complex subunit Virulence SESS LEE Protein 9e-107 48
escC CAI43881.1 EscC protein Virulence LEE Protein 3e-103 45
escC NP_290275.1 hypothetical protein Virulence LEE Protein 9e-103 45
unnamed AAL06362.1 EscC Virulence LEE Protein 2e-103 45
escC AAC38377.1 EscC Virulence LEE Protein 1e-101 45
ECs4575 NP_312602.1 EscC Virulence LEE Protein 9e-103 45
escC AAC31520.1 L0041 Virulence LEE Protein 7e-103 45
escC ACU09465.1 type III secretion outer membrane pore YscC/HrcC family Virulence LEE Protein 7e-103 45
escC AAK26708.1 EscC Virulence LEE Protein 3e-103 45
escC AAL57535.1 EscC Virulence LEE Protein 3e-103 45
escC YP_003223482.1 T3SS structure protein EscC Virulence LEE Protein 3e-103 45
escC CAC81855.1 EscC protein Virulence LEE II Protein 3e-103 45
escC YP_003232146.1 T3SS structure protein EscC Virulence LEE Protein 3e-103 45
escC YP_003236095.1 T3SS structure protein EscC Virulence LEE Protein 3e-102 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssaC YP_002923068.1 type III outer membrane secretin precursor VFG0495 Protein 3e-103 50
ssaC YP_002923068.1 type III outer membrane secretin precursor VFG0723 Protein 7e-102 45
ssaC YP_002923068.1 type III outer membrane secretin precursor VFG0819 Protein 4e-103 45