Gene Information

Name : pilT_3 (HDEF_1230)
Accession : YP_002924036.1
Strain : Candidatus Hamiltonella defensa T5A
Genome accession: NC_012751
Putative virulence/resistance : Virulence
Product : PilT lytic transglycosylase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 1138920 - 1139381 bp
Length : 462 bp
Strand : +
Note : COG0741

DNA sequence : 
ATGACTTTTTGGCTTGCCATCAGTTTAACCCCGGCGGCACAGGCGTTTTGTTTTAATGAAGCGGGGGCGATATACCAGAT
TGACCCGACACTGCTGAAAGCCATCGCACAGCAGGAAAGTCGCCTGTCGGCGAAAGCCGTAAACACCAATCGGGATAAAA
GGGGTCGGGTGTTGAGCGTAGATGACGGGCTGATGCAGGTGAATTCGACGCATATCCCCAGACTCCAGAAAATGGGGGTT
CTCCGCCACCCTGAGGATTTGCTCCATCAGCCCTGCCTGAACGTCAAGATTGGCGCGTGGATACTGGCGAAACATCTTCG
TGCATGTGGCGTCAACTGGGCCTGTCTGGGGTCGTATAACGCGGGCTTCCACCCCCGTCATGAAAAGAAACGCCTGCACT
ATGCCCAACAGGTTTATGCCCGCTACTGGCCGGTGGTCAGCGGTGACAGGAGAACACCGTGA

Protein sequence : 
MTFWLAISLTPAAQAFCFNEAGAIYQIDPTLLKAIAQQESRLSAKAVNTNRDKRGRVLSVDDGLMQVNSTHIPRLQKMGV
LRHPEDLLHQPCLNVKIGAWILAKHLRACGVNWACLGSYNAGFHPRHEKKRLHYAQQVYARYWPVVSGDRRTP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pilT NP_458636.1 putative membrane protein Virulence SPI-7 Protein 3e-33 57
pilT NP_807847.1 hypothetical protein Virulence SPI-7 Protein 3e-33 57
pilT AAC98888.1 PilT Virulence SPI-7 Protein 2e-33 57
ECs3711 NP_311738.1 hypothetical protein Not tested LIM Protein 4e-29 48
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 2e-17 41
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 2e-17 41
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 1e-17 41
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 1e-17 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilT_3 YP_002924036.1 PilT lytic transglycosylase VFG0539 Protein 5e-18 41