Gene Information

Name : pilS (HDEF_1228)
Accession : YP_002924034.1
Strain : Candidatus Hamiltonella defensa T5A
Genome accession: NC_012751
Putative virulence/resistance : Virulence
Product : PilS type IV pilus prepilin
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1138199 - 1138825 bp
Length : 627 bp
Strand : +
Note : -

DNA sequence :

ATGAAAAACCATTCAGTGAGATGTTATCACCCCACCCAAGAGAACAGTATGAACACACCGTCCCACTGTCATCGAGGGTT
TCTCAGTCTGGAAGCGATGGGGGTGTTAGCCGTGATTTCTTTCGCGATTGTCCTGGCAGTCGGCACCGTGTCGAGTTTGT
TTAACAAAAGCACGCTCAACGATGAAATCGCGAATGTACAATCCTTAGTGACACAATCTCGTGGCCTGTTAAAAACCCAG
GGGGAATATCCCTTCAGCAATGGCGCAAAAATGACGGGCACCCTGGTGCAGTTTGGCGGTGTGCCCGGCAACATGACCAT
TAACGGCGATAAATCCAAAGGCGAGGCAAAAATCACTAACGGCTGGGGCGGTGAGGTGATGATTGCGCCAGAAAAGGTGC
AGGGCTCTGTGAATAACAAGGGCTTTTCCGTGACCTATAAAAATGTCCCGCAGGAAGCCTGTAGCGTGATGGCGACGAAA
CTCAGTGGCAGCGCCATGATACAGGAGGTCTCCATCTCTGGCAGTCATAACGTGGGGGGAGTCACCGCAGAAAAAGCCGG
GGCGCAATGCAAACCCGATAACGGTTCTGTCGGCGTGAATACCCTCATTTTTAAATCCAGTCATTAA

Protein sequence :

MKNHSVRCYHPTQENSMNTPSHCHRGFLSLEAMGVLAVISFAIVLAVGTVSSLFNKSTLNDEIANVQSLVTQSRGLLKTQ
GEYPFSNGAKMTGTLVQFGGVPGNMTINGDKSKGEAKITNGWGGEVMIAPEKVQGSVNNKGFSVTYKNVPQEACSVMATK
LSGSAMIQEVSISGSHNVGGVTAEKAGAQCKPDNGSVGVNTLIFKSSH

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
YE3500	YP_001007661.1	putative type IV prepilin	Virulence	YAPI	Protein	9e-27	43

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
pilS	YP_002924034.1	PilS type IV pilus prepilin	VFG2315	Protein	3e-27	43