Gene Information

Name : HDEF_1152 (HDEF_1152)
Accession : YP_002923965.1
Strain : Candidatus Hamiltonella defensa T5A
Genome accession: NC_012751
Putative virulence/resistance : Unknown
Product : ISHde3, transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1070680 - 1071081 bp
Length : 402 bp
Strand : +
Note : COG2801

DNA sequence : 
ATGATGCGTGAGGCAGGCATTGAAAGCAAGCCACGCCAGCCTCGTTATCAACCCAGTGGTAAAAAAGCCGTTTATGCTCC
TGAACACTTGAATCGTGAGTTTACCGTCAAGGCACCCAATCAGGTGGGGTGTGGCGATGTTACTGACATTTGGTCCGGTA
CTTGCTGGCTTTATCTCTCGGTTGTACTCGACTTATATGCAAGAAAAATCCTGGGGGGGGCTTTTTCCACTTCTCCCCAC
AGTCAACTGACTCAACAGGCACTCATGTTAGCTTGCGAATCACGGGGAAGACCGAAAAATGTCCTCTTTCATTCAGACCA
GGGGAGTCATTATAGTCGCTTATCGTATCGACCACATCTGTGGCAGTATCAGATAAAACAGCCGGGGAAACTGTTGGGAT
AA

Protein sequence : 
MMREAGIESKPRQPRYQPSGKKAVYAPEHLNREFTVKAPNQVGCGDVTDIWSGTCWLYLSVVLDLYARKILGGAFSTSPH
SQLTQQALMLACESRGRPKNVLFHSDQGSHYSRLSYRPHLWQYQIKQPGKLLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42035.1 hypothetical protein Not tested PAI II 536 Protein 6e-20 52
unnamed AAK01527.1 transposase B Not tested PAGI-1 Protein 3e-15 45
l0006 CAD33765.1 L0006 protein Not tested PAI I 536 Protein 1e-24 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HDEF_1152 YP_002923965.1 ISHde3, transposase VFG1554 Protein 2e-20 52
HDEF_1152 YP_002923965.1 ISHde3, transposase VFG1506 Protein 6e-25 44