|
Name : ckrop_0214 (ckrop_0214) Accession : YP_002905549.1 Strain : Corynebacterium kroppenstedtii DSM 44385 Genome accession: NC_012704 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 264598 - 265869 bp Length : 1272 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : GTGATTGATCTGAAGCAGCTTCGTGATGACCCCGACCGTGTCCGTGAATCCCAGCGCACCCGTGGCGAAGACCCGGGCCT CGTCGATCAACTCCTCCAGGCTGACCAGGCCCGACGTGAGGCTATTTCCGCTGCCGACGCCACTCGCGCAGAACACAAGG CCTATACAAAGTCCATGGGCAAGAAGATGCGCGACGCATCCCCGGAGGAAAAGGAGAACCTGCGCGCAAAAGGAACGGAA CTGTCCAACGTCGTCAAGGAAAAAGAGGAAGCCCAGCGGGTTGCTGAAGCTTCGGTTCATGACCTACAGATGCAGATCTC CAATATTGTAGAAGGTGCGCCTGCCGGTGGGGAAGAAGACTTCGTCGTTGTCGAGAAAGTGGGGACCCCGCCACAATTCG ACTTCGAGCCGAAAGACCACCTCGAGCTCGGCGAATCCCTGGGGATTATCGATATGGAGCGCGGTGCGAAGGTATCGGGC TCGCGCTTTTACTTCCTCAAGGGTGCGGGTGCTCTGCTGCAGCTCGGGATGCTGCAGCTCGCGGCACAGAAGGCCGTGCA GCACGGGTTTGAACTGATGATCACCCCGGTCATTGTTAATCCGGAGTCGATGTCCGGCACCGGTTTCCTGGGGCAGCACG CCGACGAAATCTATTACCTACAGGAGGACAACCAGTACTTGGTGGGTACCTCCGAGGTTGCGTTAGCGGGCTACCACAGC AAGGAGATTATTGACCTTTCCGCTGGCCCTAAGCGCTACGCAGGGTGGTCCTCGTGCTTCCGGCGTGAGGCTGGGTCATA TGGCAAGGACACGCGGGGAATTCTGCGCGTGCACCAGTTCGACAAGGTCGAAATGTTCAGCTACTGCAAGCCGGAGGACG CGGCCGCAGAACACCAGAAGCTCCTGAGTATGGAGCGGGAGATGCTCGCTGCCGTCGAGGTTCCTTATCGGATTATCGAC GTTGCCGGTGGCGATTTGGGTTCCTCGGCAGCGCGAAAGTTCGATACCGAAGCATGGGTGCCGACGCAGAACACGTACCG CGAATTAACGTCGACCAGTAACTGCACGACGTTCCAGGCCCGCCGACTGGGGATCCGCTACCGCGATGAGAACAATAAGA CGCAGATTGCGGCGACGTTGAATGGCACCTTGGCGACGACGCGCTGGTTAGTGGCCATTTTGGAGAACAACCAGCAGGCG GACGGGTCGGTGAAGGTCCCAGAGGCTTTGCAGCCGTATGTGGGCCAAGACGTACTGAAACCGGTGAAGTAA Protein sequence : MIDLKQLRDDPDRVRESQRTRGEDPGLVDQLLQADQARREAISAADATRAEHKAYTKSMGKKMRDASPEEKENLRAKGTE LSNVVKEKEEAQRVAEASVHDLQMQISNIVEGAPAGGEEDFVVVEKVGTPPQFDFEPKDHLELGESLGIIDMERGAKVSG SRFYFLKGAGALLQLGMLQLAAQKAVQHGFELMITPVIVNPESMSGTGFLGQHADEIYYLQEDNQYLVGTSEVALAGYHS KEIIDLSAGPKRYAGWSSCFRREAGSYGKDTRGILRVHQFDKVEMFSYCKPEDAAAEHQKLLSMEREMLAAVEVPYRIID VAGGDLGSSAARKFDTEAWVPTQNTYRELTSTSNCTTFQARRLGIRYRDENNKTQIAATLNGTLATTRWLVAILENNQQA DGSVKVPEALQPYVGQDVLKPVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 4e-65 | 41 |
