Gene Information

Name : ckrop_1572 (ckrop_1572)
Accession : YP_002906843.1
Strain : Corynebacterium kroppenstedtii DSM 44385
Genome accession: NC_012704
Putative virulence/resistance : Virulence
Product : manganese ABC transporter solute-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1863715 - 1864695 bp
Length : 981 bp
Strand : +
Note : -

DNA sequence : 
ATGGCTCCCTCACTCGGCGCTTCCTCCCCGACGCATAATCCGCGCTCACGATCCACCGCATCCAAACACCCCCGTCGACA
CGCAAAAATCCTGCCCGCCATCGCCGCCGCGCTCGTCGTCGGGCTCACTGCCAGCGGCTGCAGCGCCCTCTCCGACGATG
ACAATGGGAAGAAAGACGTCTTGGCAACGTTCACGGTCCTCGCCGACATCGCCCGGAACGTCGCCGGCGACCACGTCAAC
GTCAACTCCCTCACCAAGCCCGGCACCGAAATCCATGGCTACGACCCCACCCCGTCGGACCTCAAATCGGCAGCAAAAGC
GGACCTCATCATCTCGAATGGTCTCGGGCTCGAGCACTGGTTGGACAAGCTCACCAGCAATTCCGACGCCAAACGCGTCG
TCGCCACGGATGGGATTGAGCCACTCCCGATCACCGACGGTGAAGCCAGCGGCGAGGACAACCCGCACGCGTGGATGAGC
CCCACCAACGTGAAGAAGTACGCGACCACCATCGCGAAGGCTCTCGGGGACATCGATCCCGACCACAAAGACGACTACAA
CGACAACGCGAAGAAATACTCCGACAAGCTGGACACCATCGGTAACGACCTCCGCGCGGACCTCGAGACCGTCCCCAAGG
ACAAGCGCGCGCTCGTGACCTGCGAAGGAGCGTTCTCCTACTTAGCCAAAGACGCGGGGCTCACCGAGCATTACATCTGG
CCCGTCAACGCGGAAACCGAAGCCACACCTCAACGCATGAAGGAGACCGAGGAGTTCGTGCGCGAACACCAGGTCCCCGC
CGTGTTCTGCGAATCCACCGTGGACTCCGGCCCCCGCGAACAAATCGTCCGCGCCACCGGGGCAAAAGACGGCGGCATCC
TCTACGTCGACTCGCTGTCCGACCAAGACGGCCCCGTCCCCACCTACCTGGACCTCATCCGGTACGACGCCGACACCATC
AGCAAAGGACTCACCAGCTAA

Protein sequence : 
MAPSLGASSPTHNPRSRSTASKHPRRHAKILPAIAAALVVGLTASGCSALSDDDNGKKDVLATFTVLADIARNVAGDHVN
VNSLTKPGTEIHGYDPTPSDLKSAAKADLIISNGLGLEHWLDKLTSNSDAKRVVATDGIEPLPITDGEASGEDNPHAWMS
PTNVKKYATTIAKALGDIDPDHKDDYNDNAKKYSDKLDTIGNDLRADLETVPKDKRALVTCEGAFSYLAKDAGLTEHYIW
PVNAETEATPQRMKETEEFVREHQVPAVFCESTVDSGPREQIVRATGAKDGGILYVDSLSDQDGPVPTYLDLIRYDADTI
SKGLTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 6e-66 49
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 6e-66 49
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 5e-66 49
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-66 49
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 6e-66 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ckrop_1572 YP_002906843.1 manganese ABC transporter solute-binding protein BAC0349 Protein 3e-66 49
ckrop_1572 YP_002906843.1 manganese ABC transporter solute-binding protein BAC0439 Protein 8e-68 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ckrop_1572 YP_002906843.1 manganese ABC transporter solute-binding protein VFG0525 Protein 3e-66 49