Gene Information

Name : GBP346_A0735 (GBP346_A0735)
Accession : YP_002895459.1
Strain : Burkholderia pseudomallei MSHR346
Genome accession: NC_012695
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 697921 - 698742 bp
Length : 822 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
TTGCAGGCAGGCATCGCCCAATTTCGGAGACAGCCGCGCGCAGCGTCATTGCCGCCCAGCGGCAATCGGTTGCGCATCAT
GCGAATTCTCATCGCCGAAGACGACAGCATACTAGCGGACGGCCTCACCCGGTCACTCCGCCAATCGGGCTATGCCGTCG
ATCACGTGAGGAACGGCGTCGAGGCCGACACGGCCCTGTCGATGCAGACTTTCGACCTGTTGATCCTCGATCTCGGCCTG
CCCAGAATGTCCGGCCTCGAGGTGCTGCGCCGCCTGCGCGCGCGCAACTCGAACCTGCCCGTGCTGATCCTGACGGCCGC
CGACAGCGTCGACGAGCGCGTGAAAGGGCTCGACCTGGGCGCCGACGACTACATGGCGAAGCCGTTCGCGCTCAACGAAC
TCGAGGCGCGCGTGCGCGCGCTGACGCGGCGCGGCGCGGGAGGCGGGCCGACCGTCGTGCGGCATGGCTCGCTGTCGTTC
GACCAGGTCGGCCGGATCGCCTATGCGAACGAACGCGTGCTCGAGCTGTCCGCGCGCGAGCTCGGGCTGCTCGAGGTGCT
GCTGCAGCGCATCGGCCGGCTGGTGTCGAAGGAGCAGCTCGTCGATCACCTGTGCGAATGGGGCGAGGAAGTCAGCAACA
ACGCGATCGAGGTCTACGTCCACCGGCTGCGCAAGAAGATCGAGCCGAGCGGCGTGCGGATCACGACCGTGCGCGGCCTC
GGCTACTGCCTCGAGAAAGCCGCGCCCGCGGGCGCGAGCGACGCGCCGAACGCCGCCGCGTCGCCGGCGGCCGAGGCCGT
CGCCGGCCAGCCGGTGCGCTAG

Protein sequence : 
MQAGIAQFRRQPRAASLPPSGNRLRIMRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL
PRMSGLEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGAGGGPTVVRHGSLSF
DQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEPSGVRITTVRGL
GYCLEKAAPAGASDAPNAAASPAAEAVAGQPVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-37 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GBP346_A0735 YP_002895459.1 DNA-binding response regulator BAC0487 Protein 8e-37 45
GBP346_A0735 YP_002895459.1 DNA-binding response regulator BAC0083 Protein 5e-36 45
GBP346_A0735 YP_002895459.1 DNA-binding response regulator BAC0638 Protein 1e-29 44
GBP346_A0735 YP_002895459.1 DNA-binding response regulator BAC0347 Protein 5e-34 42
GBP346_A0735 YP_002895459.1 DNA-binding response regulator NC_002516.2.879194.p Protein 3e-31 42
GBP346_A0735 YP_002895459.1 DNA-binding response regulator CP001138.1.gene1939. Protein 3e-29 41
GBP346_A0735 YP_002895459.1 DNA-binding response regulator BAC0308 Protein 4e-31 41
GBP346_A0735 YP_002895459.1 DNA-binding response regulator BAC0197 Protein 2e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GBP346_A0735 YP_002895459.1 DNA-binding response regulator VFG1390 Protein 1e-36 44
GBP346_A0735 YP_002895459.1 DNA-binding response regulator VFG0473 Protein 2e-40 44
GBP346_A0735 YP_002895459.1 DNA-binding response regulator VFG0475 Protein 2e-29 41