Gene Information

Name : GBP346_A0513 (GBP346_A0513)
Accession : YP_002895239.1
Strain : Burkholderia pseudomallei MSHR346
Genome accession: NC_012695
Putative virulence/resistance : Virulence
Product : arabinose 5-phosphate isomerase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0794
EC number : 5.3.1.13
Position : 467755 - 468738 bp
Length : 984 bp
Strand : -
Note : identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393

DNA sequence :
ATGATAGCGAAAATCAATGATGATCGGGCGCTCGCGCTCGCCCGCGACGTGCTCGACATCGAGGCGAACGCCGTGCGCGC
GCTCGCCGAGCAGCTCGACGGCGAATTCGTCGCCGCGGTCGGGCTGCTGTTGAACTGCCGCGGGCGCGTCGTCGTGTCCG
GCATCGGCAAATCGGGGCATATCGCCCGCAAGATCGCCGCGACGCTCGCGAGCACCGGCACCCCCGCCTTTTTCGTCCAC
CCGGCCGAGGCGAGCCACGGCGACCTCGGCATGGTCACGAAGGACGACGTGTTCGTCGCGATCTCGAACTCCGGCGAATC
GGAGGAGCTCGTCGCGATCCTGCCGCTCATCAAGCGGCTCGGCGCGAAGCTGATCGCGATGACGGGCCGCCCGGCATCGA
GCTTGGCGACGCTGTCCGACGTCCACCTGAACGCGGGCGTCGCGAAGGAAGCCTGCCCGCTGAACCTCGCGCCGACGGCG
AGCACGACGGCCGCGCTCGCGCTCGGCGACGCGCTCGCCGTCGCGGTGCTCGACGCGCGCGGCTTCGGCTCCGACGATTT
CGCGCGCTCGCACCCGGGCGGCGCGCTCGGCCGGCGCCTGCTCACGTACGTGCGCGACGTGATGCGCACGGGCGACGAAG
TGCCCGCCGTGCCGCTCGACGCGACGCTCTCCGACGCCCTGTTCCAGATCACCGCGAAGCGCATGGGCATGACGGCCGTC
ATCGACGACGCGAACCGCGTGGCCGGCATCTTCACCGACGGCGACCTGCGCCGCGTGCTCGAGCGCGACGGCGATTTCCG
CCGGCTGCCGATCGTCGACGTGATGACGCGCCATCCGCGCACGATCGCGCCGGATCACCTCGCCGTCGAGGCGGTGGAAC
TGATGGAGCGCCACCGGATCAATCAGATGCTCGTCGTCGACGAGCGCGGCGCGCTGATCGGCGCGCTCAACATGCACGAT
CTGTTCTCGAAGAAGGTGATTTGA

Protein sequence :
MIAKINDDRALALARDVLDIEANAVRALAEQLDGEFVAAVGLLLNCRGRVVVSGIGKSGHIARKIAATLASTGTPAFFVH
PAEASHGDLGMVTKDDVFVAISNSGESEELVAILPLIKRLGAKLIAMTGRPASSLATLSDVHLNAGVAKEACPLNLAPTA
STTAALALGDALAVAVLDARGFGSDDFARSHPGGALGRRLLTYVRDVMRTGDEVPAVPLDATLSDALFQITAKRMGMTAV
IDDANRVAGIFTDGDLRRVLERDGDFRRLPIVDVMTRHPRTIAPDHLAVEAVELMERHRINQMLVVDERGALIGALNMHD
LFSKKVI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsF AAZ04466.1 polysialic capsule transport protein Virulence PAI I APEC-O1 Protein 1e-54 48
kpsF YP_854329.1 polysialic acid capsule synthesis protein KpsF Not tested PAI I APEC-O1 Protein 2e-54 48
kpsF CAE85210.1 KpsF protein Virulence PAI V 536 Protein 9e-55 47