Gene Information

Name : GBP346_A4195 (GBP346_A4195)
Accession : YP_002898848.1
Strain : Burkholderia pseudomallei MSHR346
Genome accession: NC_012695
Putative virulence/resistance : Virulence
Product : BapC protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 4019381 - 4019866 bp
Length : 486 bp
Strand : -
Note : identified by match to protein family HMM PF01464

DNA sequence : 
ATGGAGAAGCGATTCGTTATTGTCGCGATGTTTGCCGCCGGCGCATGGTTCGCCAGCGCACCGGCGCGCGCCGACTGCTA
CGACGAAGCCGCGAAGTATCAGAAGGTGAATCCGCTCGTCCTGCGCGCGATCGCGTGGCAGGAATCGCATAATCGTCCGG
AGGCGCTCAACAAGAACGCGAACGGATCGACCGACTACGGCCTCATGCAGATCAACTCGATCCATCTGCCGACGCTGTCC
CGTTACGGGATCACGAAGGACACGCTGATGGAGCCGTGCAAGAGCGTCTATATCGCCGCCTGGCATCTGCGCCGCAAGAT
GGACAAGTACGGCAACACGTGGCAAGCGATCGGCGCGTACCATTCGGAAACGCCGTCGCTGCGCGACAAGTACGCACGGC
AGATCGCCGACATTCTCGCTCGATGGAAGCTGCTGCCCGCGTCTGCGGCATCTGCCACGCAAGATACGCAAAGCGCGCAG
CGCTAG

Protein sequence : 
MEKRFVIVAMFAAGAWFASAPARADCYDEAAKYQKVNPLVLRAIAWQESHNRPEALNKNANGSTDYGLMQINSIHLPTLS
RYGITKDTLMEPCKSVYIAAWHLRRKMDKYGNTWQAIGAYHSETPSLRDKYARQIADILARWKLLPASAASATQDTQSAQ
R

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpaH YP_362172.1 transglycosylase HpaH Virulence Hrp PAI Protein 3e-35 66
hpaH AAL78295.1 HpaH precursor Virulence Hrp PAI Protein 2e-35 66
hpa2 AAF61278.1 Hpa2 precursor Virulence Hrp PAI Protein 9e-35 66
XC_3001 YP_244069.1 Hpa2 protein Virulence Hrp PAI Protein 1e-35 65
hpa2 NP_636615.1 Hpa2 protein Virulence Hrp PAI Protein 1e-35 65
hpa2 NP_640772.1 Hpa2 protein Virulence Hrp PAI Protein 4e-35 64
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 7e-14 44
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 7e-14 44
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 6e-14 44
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 6e-14 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GBP346_A4195 YP_002898848.1 BapC protein VFG0539 Protein 2e-14 44