Gene Information

Name : amt (GBP346_A0398)
Accession : YP_002895125.1
Strain : Burkholderia pseudomallei MSHR346
Genome accession: NC_012695
Putative virulence/resistance : Unknown
Product : ammonium transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0004
EC number : -
Position : 352300 - 353802 bp
Length : 1503 bp
Strand : +
Note : identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836

DNA sequence :
ATGCGCAAAATCCTGATGTCCCTGTTGATGGCCGGCTCGCTGCTTGCGGGCGGCATCGGCGCCGCGATGGCCGACGACGC
GTCGTCGGCTCCCGCCGCCGCATCGGCCGCAACGGCTTCCGACACGTCGGCCGGCGCCGCCGCGTCCGCACCGGCCGCGT
CCGCCGCACCGGCCGCATCGGCGGCACCCGCCGCGTCGGCGCCCGCGGCAGCGTCCGCCGCCGCGCCGGCTTCGGCCGCC
GCCGCGCCCGCCGCGCCGACCGCGCCGTTCTCGGTCGATTCGTCGAAGATCAACTCGGGCGACACCGCGTGGATGCTCAC
GTCGACCGCGCTCGTGCTGTTCATGACGATCCCGGGCCTCGCGCTCTTCTACGGCGGCATGGTCCGCAAGAAGAACGTGC
TCGCGACCGTGATGCAGAGCTTCGCGATCACCGCGCTGATCACGGTCCTCTGGACGGTGGTCGGCTACAGCCTCGCGTTC
ACGCCGGGCAACGGCTTCATCGGCGGCTTCTCGCGCGTGTTCCTGTCCGGGATGAACTACATCCACGGCGACAAGGCGAC
GACGCTCACCGTCAGCCATCTCGCGTCGACGATCCCGGAATCGGTCTACTTCGTCTACCAGATGACGTTCGCGATCATCA
CGCCGGCGCTCATCTGCGGCGCGTTCGCCGACCGGATGAAATTCTCGGCGATGCTCGTCTTCATGACGCTGTGGTCGCTG
ATCGTCTACGTGCCGATCGCGCACATGGTCTGGGAGCCGACGGGCTGGCTGTCGGCGGACGGCGTGCTCGACTTCGCGGG
CGGCACGGTCGTGCACATCAACGCCGGCATCGCGGGCCTCGTGTCGTGCCTCATGCTCGGCAAGCGCGTCGGCTACGGCC
GCGAAGCGATGGCGCCGCACAACCTGGTGCTGACGCTGATCGGCGGCTCGATGCTGTGGGTGGGCTGGTTCGGCTTCAAC
GCGGGCTCCGCGGTGGCCGCGGACGGCCGCGCCGGCTTCGCGATGCTGACGACGCAAGTCGCCACCGCGTGCGCCGCGCT
CGGCTGGATGTTCGCCGAATGGATCGCCAAGGGTAAGCCTTCGGTGCTCGGCATCGTGTCGGGCGCGGTCGCGGGTCTCG
TCGCGATCACGCCGGCCGCCGGCTTCGTCGGCGTCGCGGGCGCGCTCGTGATCGGCATCGCGGCGGGCGTCGTCTGCTTC
TGGTCGGCGACGTGGCTCAAGCACAAGCTCGGCTACGACGATTCGCTCGACGCGTTCGGCGTGCACGGCGTGGGCGGCAT
TCTCGGCGCGCTGCTCACGGGCGTGTTCGCGGTCAAGGACATCGGCGGCGCGGACGGCAGCCTGCTGCTGCAGGCCAAGG
GCGTCGCGATCACGCTCGTCTACAGCGGCATCGTCAGCTTCGTGCTGCTGAAGGTGATCGACATCGTGATCGGCTTGCGC
GTGACCGAGGAAGAGGAGCGCGAAGGCCTCGACGTGATCCTGCACGGCGAGCACGTCGAATAA

Protein sequence :
MRKILMSLLMAGSLLAGGIGAAMADDASSAPAAASAATASDTSAGAAASAPAASAAPAASAAPAASAPAAASAAAPASAA
AAPAAPTAPFSVDSSKINSGDTAWMLTSTALVLFMTIPGLALFYGGMVRKKNVLATVMQSFAITALITVLWTVVGYSLAF
TPGNGFIGGFSRVFLSGMNYIHGDKATTLTVSHLASTIPESVYFVYQMTFAIITPALICGAFADRMKFSAMLVFMTLWSL
IVYVPIAHMVWEPTGWLSADGVLDFAGGTVVHINAGIAGLVSCLMLGKRVGYGREAMAPHNLVLTLIGGSMLWVGWFGFN
AGSAVAADGRAGFAMLTTQVATACAALGWMFAEWIAKGKPSVLGIVSGAVAGLVAITPAAGFVGVAGALVIGIAAGVVCF
WSATWLKHKLGYDDSLDAFGVHGVGGILGALLTGVFAVKDIGGADGSLLLQAKGVAITLVYSGIVSFVLLKVIDIVIGLR
VTEEEEREGLDVILHGEHVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00287 YP_008207752.1 Ammonia permease Not tested AbaR25 Protein 2e-99 58
BJAB0868_00291 YP_008211617.1 Ammonia permease Not tested AbaR26 Protein 2e-99 58