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Name : GBP346_A3679 (GBP346_A3679) Accession : YP_002898351.1 Strain : Burkholderia pseudomallei MSHR346 Genome accession: NC_012695 Putative virulence/resistance : Virulence Product : type IV pilus assembly protein TapB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3546907 - 3548130 bp Length : 1224 bp Strand : + Note : identified by match to protein family HMM PF00437 DNA sequence : GTGCGGTCCGCAGCATCCGCGCTGCCCCGGCCGCGCGCGCCCGAGCTCGCCGACGACGCACCCGCGGTCGGTATCGTCGC CGACATGCTGCGCGCGGCCCACGAGCGCGATGCTTCCGACATCCATGTCGAGCCCTGTGAATCCGGCTGGCGCGTGCGTC TGCGCATCGACGGCGTGCTGCACGAGTTCGCGCGGCCGCCCACTCATTTGCGCGACGCATGCGTGACGCGCATCAAGGTG CTCGCGCGGATGGACATCGCCGAGCGCCGCGTGCCGCAGGACGGCCGGCTGCGGCTCCCGCTCGCGCCGGGGCGCGCGGG CGACTACCGCGTGAGCTCGCTGCCGACGCTGCATGGCGAGAAACTCGTGCTGCGGCGTCTGGAGACGCTGCCCGCCGATC TGTCGCTCGCCGCGCTCGGCTTCGACGCGGCTCAGGCACGCGGCGTCGAGGCGGCGATCGGCGCGCCGCACGGTCTCATC CTCGTCACGGGGCCGACGGGCAGCGGCAAGACGCTGTCACTGTATTGCTTCCTGCAAATGCTGAACGACGTGTCACGCAA CGTCTGCACGGTCGAGGATCCGGCCGAGATCGAGCTCGACGGCATCAACCAGGTCGGCGTGCGCGAGAAGGCGGGCCTCA CCTTCGCGGTCGCGCTGCGCGCGTTCCTGCGGCAGGATCCCGACGTCATCATGGTCGGCGAGATACGCGATGCGCAGACC GCCGACGTCGCGCTGAAAGCCGCGCAGACCGGGCACCTCGTGCTGTCGACGCTGCACACGAATGACGCGCCCGCCGCGGT AGCCCGCCTGCTCGACATCGGCGTCGCGCCGTACAACCTCGCCGCCGCGCTGCGGCTCGTGACAGCGCAGCGGCTCGTGC GACGCCTGTGCCCCGCTTGCCGCGCGCCGTCGGACGCGTCGCCCGCCACACTGCGCGCCGCGGGATTCGACGCCGCGTCG ATCGACGCCGGCTGGCGCCCGTATGCCGCGAACGGATGCGCCGCATGCCATGGAATCGGTTATCGGGGGCGCATCGGCAT CCATCAGGTGATGCCGCTGTCCGCCGAGTTGCGCAATCTGACCGTCGCGCGCGCGAGCAGCGCCGAACTCGCGCGACAAG CGCGCGCCGAAGGCATGGCGAGCCTGCGCGATGCGGCACTCGCCCGCGTTCGCGACGGCACGACGAGCTTGAGCGAAGCG CTCGCCACGACGGAGGCAGCATGA Protein sequence : MRSAASALPRPRAPELADDAPAVGIVADMLRAAHERDASDIHVEPCESGWRVRLRIDGVLHEFARPPTHLRDACVTRIKV LARMDIAERRVPQDGRLRLPLAPGRAGDYRVSSLPTLHGEKLVLRRLETLPADLSLAALGFDAAQARGVEAAIGAPHGLI LVTGPTGSGKTLSLYCFLQMLNDVSRNVCTVEDPAEIELDGINQVGVREKAGLTFAVALRAFLRQDPDVIMVGEIRDAQT ADVALKAAQTGHLVLSTLHTNDAPAAVARLLDIGVAPYNLAAALRLVTAQRLVRRLCPACRAPSDASPATLRAAGFDAAS IDAGWRPYAANGCAACHGIGYRGRIGIHQVMPLSAELRNLTVARASSAELARQARAEGMASLRDAALARVRDGTTSLSEA LATTEAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 6e-73 | 49 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-73 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| GBP346_A3679 | YP_002898351.1 | type IV pilus assembly protein TapB | VFG2426 | Protein | 4e-172 | 99 |
| GBP346_A3679 | YP_002898351.1 | type IV pilus assembly protein TapB | VFG0233 | Protein | 4e-90 | 50 |
| GBP346_A3679 | YP_002898351.1 | type IV pilus assembly protein TapB | VFG2048 | Protein | 2e-73 | 49 |
| GBP346_A3679 | YP_002898351.1 | type IV pilus assembly protein TapB | VFG0182 | Protein | 5e-71 | 48 |
| GBP346_A3679 | YP_002898351.1 | type IV pilus assembly protein TapB | VFG1876 | Protein | 2e-67 | 44 |
