Gene Information

Name : Tola_0366 (Tola_0366)
Accession : YP_002891582.1
Strain : Tolumonas auensis DSM 9187
Genome accession: NC_012691
Putative virulence/resistance : Virulence
Product : general secretory pathway protein E
Function : -
COG functional category : N : Cell motility
COG ID : COG2804
EC number : -
Position : 414509 - 416011 bp
Length : 1503 bp
Strand : -
Note : KEGG: aha:AHA_0570 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase

DNA sequence :
ATGCCTCAGGAGTCCACGGCAACCGTGATTGAACACGAGCAACCCGTTCGTCTGAATTTTTCCTTTGCCCGCGATCATGG
CGTCTTGCTGCAATGGCAACAGGCTGAACCCGTCCTGTTTTGCCGGACCGGCGTCAGTGCGCAGACGCTGCAGGAGATCC
GTCGTTTGCTGCGCCGGCCTTTTCGGTTGCACTGGCTGGATGCCGATGCCTTTGAACAGCAACTGACCGATGATTATCAG
CGTGACTCCTCCGAAGCACGCCAGCTGATGGAAGATATCGGCAACGAAGTGGATTTTTTCACTCTGGCCGAAGAGCTGCC
GACCAGTGAGGATCTGCTGGATGCTGACGATGATGCCCCCATTATCCGTTTGATTAACGCCATGCTGAGTGAAGCCATCA
AATCGGAAGCGTCGGATATTCATATTGAGACGTTTGAAAAACACCTCATCATCCGTTTCCGCATTGACGGTGTCCTGCGT
GAAATTCTGCGTCCGCAACGCAAACTGGCTTCACTGCTGGTATCCCGCATTAAGGTAATGGCCAAACTGGATATCGCTGA
AAAACGGGTACCACAGGATGGTCGTATCGGCCTGCGTATCGGCGGCCGCGCCGTCGATGTGCGTGTATCTACCATGCCTT
CCAGCTACGGTGAACGCGTAGTGCTGCGTTTGCTGGATAAAAACAACGTCCGGCTGGAACTGAAACAGCTTGGTATGACG
GATGCGAACCGCGCGCATATCGCCGATTTGATCCAGAAACCCCACGGTATCATTCTGGTCACTGGTCCGACTGGTTCCGG
TAAATCCACTACGCTGTATGCTGCACTGTCGGAAATCAACACCAAGGATCGCAACATCCTGACGGTAGAAGATCCTATCG
AATACGATCTGGAAGGCGTTGGTCAGACGCAGGTTAACCCCAAAGTCGACATGACGTTTGCCCGCGGGTTACGCGCAATT
TTACGTCAGGATCCGGATGTCGTCATGGTGGGTGAGATCCGGGATGTGGAAACAGCACAGATCGCCGTCCAGGCCTCATT
AACCGGCCATCTGGTGCTCTCTACACTGCATACGAATACCGCAATTGGTGCGATCACCCGTCTGCAGGATATGGGCGTGG
AACCCTTCCTGCTTTCCACCTCCCTGCTGGCCGTATTGGCACAGCGTCTGGTGCGTACTCTTTGCCCGGTCTGTAAACAA
CCACAATTGCTGAGTGAAGAAGAACGTCAGCGCTACGAATTACCGGTCGGCGTCACGCATCTGTTTAAAGCCGGCGGCTG
TGATGCCTGTAACTTTACCGGTTACAGAGGGCGTACCGGTATTTATGAGCTGCTGATCGTTGATGAAAAAGTCCGTGAAG
CCATCCATGCCGGTGCCGGGGAATTTGCAATTGAGCATCTGATCCGATCACACACTCCCAGCATCCGGGCCGATGGTCTG
CAGAAAGTCCTGAACGGGGAAACCACGCTGGAAGAAGTCATGCGTGTAACACGGGAGGATTAA

Protein sequence :
MPQESTATVIEHEQPVRLNFSFARDHGVLLQWQQAEPVLFCRTGVSAQTLQEIRRLLRRPFRLHWLDADAFEQQLTDDYQ
RDSSEARQLMEDIGNEVDFFTLAEELPTSEDLLDADDDAPIIRLINAMLSEAIKSEASDIHIETFEKHLIIRFRIDGVLR
EILRPQRKLASLLVSRIKVMAKLDIAEKRVPQDGRIGLRIGGRAVDVRVSTMPSSYGERVVLRLLDKNNVRLELKQLGMT
DANRAHIADLIQKPHGIILVTGPTGSGKSTTLYAALSEINTKDRNILTVEDPIEYDLEGVGQTQVNPKVDMTFARGLRAI
LRQDPDVVMVGEIRDVETAQIAVQASLTGHLVLSTLHTNTAIGAITRLQDMGVEPFLLSTSLLAVLAQRLVRTLCPVCKQ
PQLLSEEERQRYELPVGVTHLFKAGGCDACNFTGYRGRTGIYELLIVDEKVREAIHAGAGEFAIEHLIRSHTPSIRADGL
QKVLNGETTLEEVMRVTRED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 5e-148 66
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 3e-148 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tola_0366 YP_002891582.1 general secretory pathway protein E VFG2048 Protein 2e-147 66
Tola_0366 YP_002891582.1 general secretory pathway protein E VFG0182 Protein 3e-142 63
Tola_0366 YP_002891582.1 general secretory pathway protein E VFG1876 Protein 2e-134 57
Tola_0366 YP_002891582.1 general secretory pathway protein E VFG2426 Protein 9e-73 46
Tola_0366 YP_002891582.1 general secretory pathway protein E VFG0112 Protein 2e-84 46
Tola_0366 YP_002891582.1 general secretory pathway protein E VFG0233 Protein 3e-80 45