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Name : lcrD (JALI_0891) Accession : YP_002887716.1 Strain : Chlamydia trachomatis Jali20 Genome accession: NC_012686 Putative virulence/resistance : Virulence Product : low calcium response protein D Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 104010 - 106139 bp Length : 2130 bp Strand : - Note : - DNA sequence : ATGAACAAGCTACTCAACTTTGTCAGTAGAACATTCGGGGGAGATGCGGCCCTGAATATGATAAACAAGTCCAGTGACCT GATCCTCGCCATGTGGATGTTAGGCGTGGTCTTGATGATCATTTTGCCATTGCCTCCAGCTATGGTGGACTTTATGATCA CCATTAACTTGGCGATCTCTGTGTTCCTGCTGATGGTTGCCTTGTATATTCCCAGCGCATTACAACTTTCTGTTTTCCCC TCCTTACTCTTAATCACCACAATGTTCCGATTGGGGATTAACATTTCTTCCTCCCGACAAATTCTCCTTCATGCTTATGC TGGTCACGTGATCCAAGCCTTCGGAGACTTCGTCGTTGGAGGAAACTATGTCGTTGGATTTATTATCTTCCTAATCATCA CCATCATTCAGTTTATCGTGGTAACAAAAGGTGCGGAGAGGGTCGCTGAGGTAGCTGCTCGATTCCGATTAGATGCCATG CCTGGTAAACAGATGGCCATCGATGCCGACCTACGAGCAGGAATGATTGATGCGACACAAGCTCGTGATAAGCGATCTCA GATTCAGAAAGAAAGTGAACTTTATGGAGCTATGGACGGAGCCATGAAGTTCATTAAGGGAGACGTGATCGCAGGGATTG TTATCTCCTTGATTAACATCGCAGGAGGATTAGTCATCGGAGTGACCATGAAGGGCATGACGATGGCTCAAGCCGCGCAC ATCTACACGTTGATTACGATCGGTGACGGGTTAGTTTCTCAAATCCCCTCTCTGTTAATCTCTTTAACAGCTGGTATCGT AACCACTCGAGTATCTAGTGATAAAGACACTAACCTTGGTAAGGAAATTTCTAGCCAGTTGGTTAAAGAACCTCGGGCAC TTCTCCTATCCGCAGGCGCAACCTTAGGAATCGGATTCTTCAAAGGTTTCCCTTTATGGTCATTTGCTTTAATGGCCATT CTCTTTGCAGTATTAGGTATTCTGTTAATCACTAAGAAAAACTCTCCAGGGAAAAAAGGCGGAGCCAGCTCTACTACTAC AGTAGGTGCCGCTGATGGAGCTGCGGCTTCAGGAGAAAATTCTGATGATTATTATGCTCTGACTCTTCCTGTAATTCTTG AACTTGGAAAAGATCTTTCTAAACTCATCCAACAACGAACCAAATCGGGGCAAAGTTTTGTGGATGATATGATTCCTAAA ATGCGTCAGGCTCTCTATCAGGATATTGGAATTCGTTATCCAGGAATCCATGTACGTACAGACTCCCCTTCCTTGGAAGG TAATGACTATATGATTCTGCTGAATGAGGTTCCCTACGTTCGCGGAAAAATTCCACCAAATCATGTGTTAACAAATGAAG TAGAAGAAAACTTATCTCGGTATAACTTACCTTTTATTACTTACAAAAATGCTGCAGGATTGCCTTCCACTTGGGTTAGT ACAGATGCTCTCACTATCTTAGAGAAAGCTGCGATTAAATACTGGTCTCCTTTGGAAGTGATTATTCTTCACTTGTCCTA CTTCTTCCATAGAAATTCTCAAGAGTTCTTAGGCATTCAGGAAGTACGCTCTATGATTGAATTTATGGAACGTTCCTTCC CTGATCTTGTTAAAGAGGTTACCCGTCTTATTCCTCTACAGAAGCTTACAGAAATCTTTAAGCGTTTAGTTCAAGAACAA ATATCCATTAAGGATTTACGAACTATTTTGGAATCTTTGAGCGAATGGGCACAGACGGAAAAAGATACAGTATTACTTAC TGAATATGTGCGCTCTTCCTTGAAACTCTATATCAGCTTCAAGTTCTCTCAAGGGCAATCCGCTATTTCTGTATATCTGC TCGATCCTGAAATTGAAGAGATGATCCGCGGAGCAATCAAACAAACTTCTGCAGGATCTTATTTGGCTTTAGATCCAGAT TCTGTAAACCTCATCTTAAAATCTATGCGAATGACTATTACTCCTACACCTCCTGGAGGACAGCCTCCTGTGCTGTTGAC AGCAATTGATGTCAGACGCTATGTACGGAAATTGATAGAGACAGAATTCCCTGATATCGCTGTGATTTCTTACCAAGAAG TTTTACCTGAAATTAGAATCCAGCCTTTGGGAAGAATTCAAATTTTCTAA Protein sequence : MNKLLNFVSRTFGGDAALNMINKSSDLILAMWMLGVVLMIILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFP SLLLITTMFRLGINISSSRQILLHAYAGHVIQAFGDFVVGGNYVVGFIIFLIITIIQFIVVTKGAERVAEVAARFRLDAM PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINIAGGLVIGVTMKGMTMAQAAH IYTLITIGDGLVSQIPSLLISLTAGIVTTRVSSDKDTNLGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAI LFAVLGILLITKKNSPGKKGGASSTTTVGAADGAAASGENSDDYYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIPK MRQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKIPPNHVLTNEVEENLSRYNLPFITYKNAAGLPSTWVS TDALTILEKAAIKYWSPLEVIILHLSYFFHRNSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQ ISIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDPD SVNLILKSMRMTITPTPPGGQPPVLLTAIDVRRYVRKLIETEFPDIAVISYQEVLPEIRIQPLGRIQIF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-139 | 46 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 7e-96 | 42 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-95 | 41 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-95 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lcrD | YP_002887716.1 | low calcium response protein D | VFG2126 | Protein | 0.0 | 99 |
| lcrD | YP_002887716.1 | low calcium response protein D | VFG0384 | Protein | 3e-139 | 46 |
| lcrD | YP_002887716.1 | low calcium response protein D | VFG0064 | Protein | 2e-142 | 46 |
| lcrD | YP_002887716.1 | low calcium response protein D | VFG0198 | Protein | 2e-128 | 46 |
