Gene Information

Name : Bcav_3404 (Bcav_3404)
Accession : YP_002883408.1
Strain : Beutenbergia cavernae DSM 12333
Genome accession: NC_012669
Putative virulence/resistance : Virulence
Product : ATPase AAA-2 domain-containing protein
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 3804533 - 3807064 bp
Length : 2532 bp
Strand : -
Note : PFAM: ATPase family associated with various cellular activities (AAA); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA)

DNA sequence :
ATGTTCGAGAGGTTCACGGACCGAGCCCGCCGGGTCGTCGTCCTCGCCCAAGAAGAGGCGAGGCTCCTCAACCACAACTA
CATCGGGACCGAGCACATCCTCCTGGGCCTCATCCACGAGGGCGAGGGGGTCGCCGCCAAGGCGCTGGAGTCGCTCGGCA
TCTCGCTCGACATCGTCCGCCAGCAGGTCATCGAGATCATCGGCGAGGGCCAGCAGGCCCCGACCGGGCACATCCCGTTC
ACGCCGCGCGCCAAGAAGGTGCTCGAGCTCTCGCTGCGCGAGGCGCTCCAGCTCGGCCACAACTACATCGGCACCGAGCA
CATCCTCCTGGGTCTCATCCGGGAGGGCGAGGGAGTCGCGGCGCAGGTGCTCGGCAAGCTCGGCGCCGACCTGAACCGCG
TCCGCCAGCAGGTGCTGCAGCTGGTCCAGGGCTACCAGGGCAAGGAGCCCGTGGCAGCCGGCGGTCCCACCGAGGGTCAG
CCCTCGGGCTCGGCCGTGCTCGACCAGTTCGGCCGCAACCTCACGCAGGCTGCGCGCGAGGGCAAGCTCGACCCGGTCAT
CGGGCGCGAGACGGAGACCGAGCGGGTCATGCAGGTCCTGTCCCGCCGCACGAAGAACAACCCCGTGCTCGTCGGCGAGC
CCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCGCAGGACATCGTCCGCGGCGACGTGCCCGAGACGCTCAAGGAC
AAGCAGCTGTACACGCTCGACCTCGGCGCGCTCGTCGCGGGGTCGCGCTACCGCGGTGACTTCGAGGAGCGCCTGAAGAA
GGTGCTCAAGGAGATCCGCACGCGCGGCGACATCATCCTGTTCATCGACGAGATCCACACGCTCGTCGGGGCGGGCGCCG
CGGAGGGCGCGATCGACGCCGCGAGCATCCTCAAGCCGATGCTGGCGCGTGGCGAGCTGCAGACGATCGGCGCGACGACG
CTCGACGAGTACCGCAAGTACGTCGAGAAGGACCCGGCGCTCGAGCGTCGGTTCCAGCCGATCACCGTCAACGAGCCGAG
CCTCACGCACGCCATCGACATCCTCAAGGGCGTGCGCGACCGGTACGAGGCGCACCACCGCGTCTCGATCACCGACGCCG
CGCTCGTCGCGGCGGCCACGCTCGCCGACCGGTACGTCAACGACCGCTACCTGCCCGACAAGGCGATCGACCTCATCGAC
GAGGCGGGCGCGCGCCTGCGCATCCGCCGGATGACGGCCCCGCCGGAGCTGCGCGAGCTCGACGACCAGATCGCCGAGAC
GCGCCGCTCGAAGGAGTCGGCGATCGACGACCAGGACTTCGAGCGCGCCGCCCGTCTGCGCGACGAGGAGAAGCAGCTGA
CGAACCGCCGTCTCGACCGCGAGAAGGCGTGGAAGTCGGGTGACCTCGACGCCGTCGCGGAGGTCGACGAGGAGCTGATC
GCCGAGGTGCTCGCCGCCTCGACGGGCATCCCCGTGTTCAAGCTGACCGAGGAGGAGTCCTCGCGGCTGCTGCGCATGGA
GGACGAGCTGCACAAGCGGATCGTCGGCCAGGAGGCGGCCGTCAAGGCGCTGTCGCAGGCCATCCGCCGCACGCGGGCCG
GCCTCAAGGACCCGAAGCGCCCGGGTGGGTCGTTCATCTTCGCCGGCCCGACCGGCGTCGGAAAGACGCTGCTCGCGCGG
ACGCTCGCGGAGTTCCTGTTCGGCGACGAGGACGCGCTCATCCAGCTCGACATGAGCGAGTTCTCCGAGAAGCACACGGT
CTCGCGGCTGTTCGGCTCCCCGCCCGGCTACGTCGGGTACGAGGAGGGCGGCCAGCTCACGGAGAAGGTGCGGCGCCGTC
CGTTCTCGGTGGTGCTGTTCGACGAGGTGGAGAAGGCCCACGCGGACATCTTCAACTCGCTGCTGCAGATCCTCGAGGAC
GGTCGCCTGACGGACAGCCAGGGCCGCGTCGTCGACTTCAAGAACACCGTGATCATCATGACCACGAACCTCGGCACGCG
GGACATCGCCAAGGGGCTCCAGACGGGGTTCCAGGCCGGCGGTGACCTGTCGACGAGCTACGAGCGCATGAAGGCCAAGG
TGAACGACGAGCTCAAGCAGCACTTCCGGCCGGAGTTCCTCAACCGCGTGGACGACGTGATCGTCTTCCCGACGCTCTCG
CAGGAGGAGATCTTCGCGATCGTCGACTTCGAGATCGCGAAGGTGGACAAGCGCCTGGCCGACAAGGACATGGCGATCGA
GATCACGCCCGCCGCGAAGGCCCTGCTCGCCGAGAAGGGCTACGACCCGGTGCTCGGGGCACGGCCCCTGCGCCGCGCGA
TCCAGCGGGAGATCGAGGACCAGCTGTCCGAGAAGATCCTGTTCGGGGAGCTCAAGGCCGGCCAGAAGGTCACGGTCGAC
GCCGTCGGCGAAGGCCTGCTGGGCGAGTTCACGTTCGTCGGTTCGCCGCGGTCGGCGGACGCCGAGCCGGTCGCCGTCGG
CGCCGGTCCCGGTGGCACGGTGACCGACGCGGAGCTGCCGCGGCTCGACTGA

Protein sequence :
MFERFTDRARRVVVLAQEEARLLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDIVRQQVIEIIGEGQQAPTGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLGKLGADLNRVRQQVLQLVQGYQGKEPVAAGGPTEGQ
PSGSAVLDQFGRNLTQAAREGKLDPVIGRETETERVMQVLSRRTKNNPVLVGEPGVGKTAVVEGLAQDIVRGDVPETLKD
KQLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDEIHTLVGAGAAEGAIDAASILKPMLARGELQTIGATT
LDEYRKYVEKDPALERRFQPITVNEPSLTHAIDILKGVRDRYEAHHRVSITDAALVAAATLADRYVNDRYLPDKAIDLID
EAGARLRIRRMTAPPELRELDDQIAETRRSKESAIDDQDFERAARLRDEEKQLTNRRLDREKAWKSGDLDAVAEVDEELI
AEVLAASTGIPVFKLTEEESSRLLRMEDELHKRIVGQEAAVKALSQAIRRTRAGLKDPKRPGGSFIFAGPTGVGKTLLAR
TLAEFLFGDEDALIQLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRRPFSVVLFDEVEKAHADIFNSLLQILED
GRLTDSQGRVVDFKNTVIIMTTNLGTRDIAKGLQTGFQAGGDLSTSYERMKAKVNDELKQHFRPEFLNRVDDVIVFPTLS
QEEIFAIVDFEIAKVDKRLADKDMAIEITPAAKALLAEKGYDPVLGARPLRRAIQREIEDQLSEKILFGELKAGQKVTVD
AVGEGLLGEFTFVGSPRSADAEPVAVGAGPGGTVTDAELPRLD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 75

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bcav_3404 YP_002883408.1 ATPase AAA-2 domain-containing protein VFG0079 Protein 0.0 60
Bcav_3404 YP_002883408.1 ATPase AAA-2 domain-containing protein VFG0080 Protein 7e-147 50
Bcav_3404 YP_002883408.1 ATPase AAA-2 domain-containing protein VFG2084 Protein 1e-86 41