Gene Information

Name : Bcav_2159 (Bcav_2159)
Accession : YP_002882173.1
Strain : Beutenbergia cavernae DSM 12333
Genome accession: NC_012669
Putative virulence/resistance : Unknown
Product : tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 2429589 - 2430524 bp
Length : 936 bp
Strand : -
Note : PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerD

DNA sequence :
ATGGACGCCGTCGGGCCCGCGCGCGACCTCGAGGACTACCTCGCGCACCTCGGCGTCGAACGGGGTCTGAGCCCGCACAC
GCTGGCCGCGTACCGGCGTGACCTGTCGCGGTATGCGGCGTACCTGGGGGCGCTCGGTCGTGCCCGGTTGTCCGACGTCC
GGCCCGCCGACGTCGACGCGTACGTCGAGGCGCTCCGGACGGGGAGCGACGGCGGGAGCGCCTTGTCGGCGTCGTCGGCG
TCACGCGCCGTGGTGGCGGTCCGGGGCTGGCACCGGTTCGCCATGCTCGAGGGCATCGCGCCGAGCGACCCGGCGGTCGA
CGTGCGGCCGCCGTCGACCACGAAGCGCCTGCCGAAGGCGATCGCCGTGGAGGATGTCGAGCGGCTGCTCGTGGCGGCGT
CGGCCGGCGACGGACCCGGCCCGCTGCGCGACCGTGCGCTGCTGGAGCTGCTGTACGGCACGGGGGCGCGGATCACGGAG
GCGACGTCGCTCGCCGTCGACGACATCGATCTCGACGACGACGCCGGTTCCGTCCGCTTGTTCGGGAAGGGGCGCCGGGA
GCGCGTGGTGCCGCTCGGGCGGTTCGCGCGCGACGCCGTCGACGCCTACCTGGTGCGCGCCCGGCCGGTGCTGGCTCAGG
CGGGGACCGGCACGCCGGCGCTGTTCCTCGGCATGCGGGGGCGGCCGCTGAGCCGGCAGAGCGCGTGGGCGATCCTGCAG
TCGGCGGCCCGGCGGGCGGACCTGGAGGAGCACGTCTCGCCGCACACGCTGCGCCACTCCTACGCGACGCACCTGCTCGC
GGGCGGCGCGGACGTGCGCGTGGTGCAGGAGCTGCTGGGCCATGCGTCGGTGACGACGACGCAGCTGTACACGCTCGTCA
CCGCGCAGACGCTGCGTGAGGTGTACGCGGCGGCGCACCCGCGGGCGCGCGGCTGA

Protein sequence :
MDAVGPARDLEDYLAHLGVERGLSPHTLAAYRRDLSRYAAYLGALGRARLSDVRPADVDAYVEALRTGSDGGSALSASSA
SRAVVAVRGWHRFAMLEGIAPSDPAVDVRPPSTTKRLPKAIAVEDVERLLVAASAGDGPGPLRDRALLELLYGTGARITE
ATSLAVDDIDLDDDAGSVRLFGKGRRERVVPLGRFARDAVDAYLVRARPVLAQAGTGTPALFLGMRGRPLSRQSAWAILQ
SAARRADLEEHVSPHTLRHSYATHLLAGGADVRVVQELLGHASVTTTQLYTLVTAQTLREVYAAAHPRARG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 3e-33 41
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 3e-33 41