Gene Information

Name : Bcav_1390 (Bcav_1390)
Accession : YP_002881411.1
Strain : Beutenbergia cavernae DSM 12333
Genome accession: NC_012669
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1582750 - 1583637 bp
Length : 888 bp
Strand : +
Note : PFAM: ABC 3 transport family

DNA sequence : 
ATGAGTCATGTGATCGACGTGCTCGTCGACCCGCTCGCGCTCGGCCTCATGCAGCGCGCGTTCCTCGTGACGGCGGCCGC
AGCGATCGTGTGCGCGCTCCTGTCGTGCTGGCTCGTCCTCATCGGCTGGTCGCTCATGGGGGACGCGCTGTCGCACGCCG
TGCTCCCCGGGGTCGTGCTCGCGTACGTCGTCGGCGTCCCGTTCACGCTCGGCGCCCTCGCGTTCGGCCTCGCGGCCGCG
GGGCTGATCGGCGTCGTCCGCGACCGGACGCGCCTGGCGGAGGACGCCGCCATCGGCGTGGTGTTCACGACGTTGTTCGC
GCTCGGTCTCGTGCTGGTCTCGCTCAACCCCGCCCAGGTCGACCTCCAGCACATCCTGCTCGGCAACGTGCTCGGCGTCT
CCGTCGCCGACACGATCCAGGTGCTCGCGCTCGCGGCCGTCACGACGACGGTGCTCCTGGTCAAGCGGCGCGACCTCACG
CTGTACGCGTTCGACCCGACGTACGCGCACGCGATCGGCCTGTCCCCGCGCCGGATCGCGGCACTGCTGCTCGGGCTGCT
GGCGCTGACGATCGTCGTCGCGCTCCAGGCGATCGGCGTCATCCTCGTCGTCGCGATGCTCGTGATCCCCGGCGCGACGG
CGCGGCTGCTCACGGAGCGCTTCGGCGTCATGCTCGTCGTGGCTCCGGCGACGGCGCTGGCCTGCGCGGTCGTCGGCCTG
TACCTCAGCTACTACGCGGGTGTCTCGAGCGGCGGAGCGGTGGTCCTCGCCCAGGGTGTGCTCTTCGGCGTCGTCGCCCT
CGTGACCCAGCTGCGCCGCCGACGCCCGGCGGGCGGGCCGACGGCGCACGCTGCCTCCGCCGAGGCGGCCCTACGCTCGG
GGGTATGA

Protein sequence : 
MSHVIDVLVDPLALGLMQRAFLVTAAAAIVCALLSCWLVLIGWSLMGDALSHAVLPGVVLAYVVGVPFTLGALAFGLAAA
GLIGVVRDRTRLAEDAAIGVVFTTLFALGLVLVSLNPAQVDLQHILLGNVLGVSVADTIQVLALAAVTTTVLLVKRRDLT
LYAFDPTYAHAIGLSPRRIAALLLGLLALTIVVALQAIGVILVVAMLVIPGATARLLTERFGVMLVVAPATALACAVVGL
YLSYYAGVSSGGAVVLAQGVLFGVVALVTQLRRRRPAGGPTAHAASAEAALRSGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-36 46
sitC NP_461784.1 permease Virulence SPI-1 Protein 4e-36 46
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-36 46
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-36 46
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-36 46
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 8e-36 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 8e-36 42
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-35 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-35 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bcav_1390 YP_002881411.1 ABC transporter BAC0351 Protein 2e-36 46
Bcav_1390 YP_002881411.1 ABC transporter BAC0441 Protein 1e-36 46
Bcav_1390 YP_002881411.1 ABC transporter BAC0442 Protein 8e-38 43
Bcav_1390 YP_002881411.1 ABC transporter BAC0352 Protein 1e-35 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bcav_1390 YP_002881411.1 ABC transporter VFG0527 Protein 2e-36 46
Bcav_1390 YP_002881411.1 ABC transporter VFG0528 Protein 9e-36 42