Gene Information

Name : Bcav_1388 (Bcav_1388)
Accession : YP_002881409.1
Strain : Beutenbergia cavernae DSM 12333
Genome accession: NC_012669
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1581063 - 1582001 bp
Length : 939 bp
Strand : +
Note : PFAM: Periplasmic solute binding protein family

DNA sequence : 
ATGTTCGGTGGCCCAAACTTCCGCGTCGTCCGTGCAGCTGCCCTGCTGCTCGGCGCGGCGGCCGCCGTCGCCGGGTGCGC
CGCGTTCACGGAGTCGGGCGGCGAGCCCGCGGGCACCGACGGCGAGCGCCCGCTCGTGCTCACGACGTTCAGCGTGCTCG
GGGACATGGCCGCCAACGTCGCGGGCGACCACCTCGACGTGGCCTCGATCGTGCCCGTGGGTGCGGAGATCCACGGGTAC
GAGCCGACCGCGCAGGACGTCGTGCGGGCCCAGGGCGCCGATCTGATCCTGGACAACGGGCTCGGTCTGGAAGCGTGGTT
CACGCGCTTCACCGACCGCACCGGCACGCCGTCGGTCACGCTCAGCGAGGGCCTCGCGACGGTGCCGATCGCGGGGACCG
ACGACGTCAACCCGCACGCCTGGATGAGCCCCGAGGGCGCCGTCCACTACGTGCACGCGATGGCCGAGGCGTTCGCGGAG
CTCGACCCGGCGCATGCCGGCGACTACGCGCGCAACGCCGACGGCTACGTGGACCGGATCGAGGAGATCGGCACGCGGGC
CGACGACGTGCTGGCCGGCATCCCGCCCGAGCATCGCCTTCTCGTGACGTGCGAGGGCGCGTTCAGCTACCTGGCGCGGG
ACATCGGCCTCGAGGAGGCGTACCTGTGGCCGGTCAACGCCGACGCCGACCCGACGGCGCAGCACGTCGCCGACGTCACG
CGGCTCGTCATCGAGCGCGAGCTCCCGGCCGTGTTCTGCGAGTCGACCGTCTCGGACGCCGTGCAGTCCCAGGTGGCCGC
CGAGTCGGGAGCACGCCTCGCGGGCCCGCTCTACGTGGACTCCCTGTCGGAGGCCGACGGCGAGGTCCCCACGTACCTGG
ACCTGCTCGCGCACGATCTCGAGGTCATCGCCGAGGGCCTGGCGGGAGGGGCACGGTGA

Protein sequence : 
MFGGPNFRVVRAAALLLGAAAAVAGCAAFTESGGEPAGTDGERPLVLTTFSVLGDMAANVAGDHLDVASIVPVGAEIHGY
EPTAQDVVRAQGADLILDNGLGLEAWFTRFTDRTGTPSVTLSEGLATVPIAGTDDVNPHAWMSPEGAVHYVHAMAEAFAE
LDPAHAGDYARNADGYVDRIEEIGTRADDVLAGIPPEHRLLVTCEGAFSYLARDIGLEEAYLWPVNADADPTAQHVADVT
RLVIERELPAVFCESTVSDAVQSQVAAESGARLAGPLYVDSLSEADGEVPTYLDLLAHDLEVIAEGLAGGAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-59 51
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-59 51
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-59 51
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-59 51
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 2e-59 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bcav_1388 YP_002881409.1 periplasmic solute binding protein BAC0349 Protein 1e-59 51
Bcav_1388 YP_002881409.1 periplasmic solute binding protein BAC0439 Protein 7e-59 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bcav_1388 YP_002881409.1 periplasmic solute binding protein VFG0525 Protein 9e-60 51