|
Name : VCD_001636 (VCD_001636) Accession : YP_002877375.1 Strain : Genome accession: NC_012668 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 690994 - 692214 bp Length : 1221 bp Strand : + Note : - DNA sequence : ATGGCCGCGTTTGAATACAAAGCGCTGGATGCCAAGGGACGCCATAAAAAAGGCGTGATTGAGGGCGATAATGCACGTCA GGTGCGTCAGCGCCTGAAAGAGCAAAGCCTAGTGCCGATGGAGGTGGTGGAGACTCAAGTCAAAGCCGCGCGCAGTCGCA GCCAAGGTTTTGCGTTTAAGCGTGGGATCAGTACGCCGGATCTGGCGCTGATCACTCGCCAATTGGCGACTTTAGTTCAA TCCGGTATGCCACTGGAAGAGTGTTTACGCGCGGTTGCCGAGCAGTCGGAAAAACCGCGGATTCGCACCATGTTGGTGGC GGTGCGCGCTAAAGTGACCGAAGGTTACACCCTCTCTGATAGTCTTGGCGATTATCCGCACGTGTTTGATGAGCTGTTTC GTTCTATGGTTGCGGCGGGCGAAAAATCTGGCCACCTCGATTCCGTTCTCGAACGTTTAGCTGACTACGCCGAAAACCGC CAGAAAATGCGCTCTAAACTGCAACAGGCCATGATTTACCCTGTGGTGCTGGTGGTGTTTGCGGTCGGTATCGTGGCGTT TTTGTTGGCAGCGGTAGTGCCGAAAATCGTGGGTCAGTTTGTGCAAATGGGGCAAGCCTTGCCGGCATCGACTCAGTTTC TGCTTGATGCCAGCGATTTCCTGCAACATTGGGGGATTTCGCTGCTGGTCGGTCTCTTGATGCTGATTTATCTGGTGCGC TGGTTGCTGACCAAGCCCGATATTCGTTTGCGTTGGGATCGCCGAGTGATTTCCTTGCCTGTGATTGGCAAGATTGCACG CGGTCTGAATACTGCGCGCTTTGCGCGTACGCTGTCGATCTGTACCTCAAGTGCAATCCCGATTCTGGATGGTATGCGCG TTGCGGTGGATGTGATGACCAATCAGTTTGTGAAACAGCAAGTGTTGGCTGCGGCCGAAAACGTACGCGAAGGCTCTAGC CTGCGCAAAGCGCTAGAGCAGACCAAGCTCTTTCCTCCCATGATGCTGCACATGATTGCCAGTGGTGAGCAGAGTGGAGA ATTGGAAGGCATGTTGACGCGCGCTGCGGATAACCAAGACAACAGTTTTGAATCAACGGTCAACATCGCGCTTGGCATTT TTACCCCGGCCTTGATTGCCTTGATGGCGGGGATGGTGCTGTTTATTGTGATGGCGACCCTGATGCCGATTTTGGAAATG AATAACTTAATGAGTCGTTAA Protein sequence : MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRGISTPDLALITRQLATLVQ SGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENR QKMRSKLQQAMIYPVVLVVFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVR WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTNQFVKQQVLAAAENVREGSS LRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEM NNLMSR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 3e-96 | 55 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-95 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| VCD_001636 | YP_002877375.1 | general secretion pathway protein F | VFG2049 | Protein | 1e-93 | 56 |
| VCD_001636 | YP_002877375.1 | general secretion pathway protein F | VFG0181 | Protein | 3e-89 | 49 |
| VCD_001636 | YP_002877375.1 | general secretion pathway protein F | VFG1870 | Protein | 1e-76 | 42 |
