Gene Information

Name : VCD_001414 (VCD_001414)
Accession : YP_002877153.1
Strain :
Genome accession: NC_012668
Putative virulence/resistance : Virulence
Product : ferrichrome transport ATP-binding protein FhuC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 429481 - 430266 bp
Length : 786 bp
Strand : -
Note : TC 3.A.1.14.3

DNA sequence :
ATGTTTCAGTTGGCTGATATTCAAATGGTTCGCGGTGGGCGCACCATTTTGGCGATCGATCATTTGACCATTCCGACCCA
TGAGCTGACAGTTGTGCTCGGTCACAACGGTTCTGGCAAATCCACCTTAGTCAGTTTACTGTCGGGCCAACAGTCGCCCG
ATAATGGTCAAGTGACCCTCAATGGTCAATCACTCTCATCGCTGCCGAGTAAAACCCTCGCCAAAGCCGTGGCCTTTTTG
CCGCAGAAATTGCCGACCAGCGCTGGATTAACCGTGCGTGAGTTGGTGCGTTTAGGGCGCTTTCCGTGGCGCGGCACCTT
GGGCCGATGGCGCAAGGAAGATGAGCTGATTATCGATGCGGCACTTGAAAAAACGGGTGTGAGTGGTTTTGCGCATAACT
TGGCGGATGAGCTTTCCGGCGGTGAGCGTCAACGCGCTTGGGTGGCGATGCTGCTTGCGCAGCAATCTCCGGTGTTGATT
TTGGATGAGCCGACGTCGGCGCTTGATGTGCATCACCAATATCAATTGATGGCGCTGCTGGCGGAGCTCAATCAAACCCA
AGGCGTGGGTATTATCGTGATTTTGCATGATCTCAATTTGGCGCTGCGCTACGCGACCCACATTGTGGCGCTTAAGCAGG
GGCAGATCGCCTTTGAAGGCGGTGCTGAATTGTTGCTCGATGAGCAGCGGTTGTCGGATCTGTATCACTCACCGATCCGT
TTGATTGATCACCCGAATCCCATTTCCCACTCTTCTACTAATAAGGTTTCGATCGTATGTGCTTGA

Protein sequence :
MFQLADIQMVRGGRTILAIDHLTIPTHELTVVLGHNGSGKSTLVSLLSGQQSPDNGQVTLNGQSLSSLPSKTLAKAVAFL
PQKLPTSAGLTVRELVRLGRFPWRGTLGRWRKEDELIIDAALEKTGVSGFAHNLADELSGGERQRAWVAMLLAQQSPVLI
LDEPTSALDVHHQYQLMALLAELNQTQGVGIIVILHDLNLALRYATHIVALKQGQIAFEGGAELLLDEQRLSDLYHSPIR
LIDHPNPISHSSTNKVSIVCA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-40 42
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 5e-40 42
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-40 42
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-40 42
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-41 41
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCD_001414 YP_002877153.1 ferrichrome transport ATP-binding protein FhuC VFG0925 Protein 3e-41 42